Anastrepha ludens (Mexican fruit fly): 128862699
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Entry
128862699 CDS
T10909
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
alud Anastrepha ludens (Mexican fruit fly)
Brite
KEGG Orthology (KO) [BR:
alud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alud03016
]
128862699
Enzymes [BR:
alud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128862699
Transfer RNA biogenesis [BR:
alud03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128862699
Prokaryotic type
tRNA splicing ligases
128862699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
128862699
NCBI-ProteinID:
XP_053957335
LinkDB
All DBs
Position
5:complement(47930123..47932105)
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AA seq
506 aa
AA seq
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MVVRPYNEELKYLEKISDCCWRIKKEFQPNMKVEGCFYVNSRLERLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPTSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNAHDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD
KWSASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIETNDRQLACARIN
SQEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFHTTPDDLDMHVIYDVSHNIAKVE
NHIVDGKEKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTERGM
HETFGSTCHGAGRALSRAKSRRNLDYKDVLEKLEEMGIAIRVASPKLVMEEAPESYKDVT
DVVDTCHIAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgcgaccttataatgaagaattaaaatatcttgagaagatcagcgactgctgc
tggcgaataaaaaaggaatttcagccgaatatgaaagtagaaggctgcttctatgtaaac
agccggctagaacggctcatgttagaagagctaaaaaattcatgtagacctggggccgtt
ggcggctttctgccgggtgtaaagcaaatagcaaatgtcgcagcgttgccgggtattgta
gggcgttccatcggactcccggatattcattctggttatggatttgctatcggaaatatg
gctgcattcgacatgaacgatcctacatcaattgtaagtccgggaggagtcggctttgat
attaactgcggtgtacgattactgcggacaaatcttttcgaaaaagatgttcaaccagtt
aaagaacaattagcgcaatctcttttcgatcatattcctgttggtgttggttctaagggc
attattcccatgaatgcccatgatatggaggaggctctagaaatggggatggattggtct
ctccgtgaaggatatgtttgggcagaagataaagagcattgtgaagaatatgggcgaatg
ctaaatgcagatccatccaaggttagtttacgtgcaaaaaaacgtggactacctcaattg
ggaacgttaggtgctggcaaccattatgcagagattcaaattgttgacgaaatatatgat
aaatggagtgctagtaaaatgggtattgaggaaaaaggtcaggtatgcgttatgatacac
tcgggtagtagaggatttggtcatcaagtagcaacagacgccttggttcagatggaaaaa
gcaatgaaacgtgaccagattgagacaaatgatcggcaattagcatgtgctcgaataaat
tcacaggagggccaagattatttgaaagcgatggcagcagcggcaaattttgcttgggtt
aatcgcagttcaatgactttcctcactcgacaggctttcgcaaaaatgttccatacaact
ccagacgaccttgatatgcacgtaatttacgatgtttctcataatattgcaaaagtggag
aatcatatcgtcgatggaaaagagaagcaattactcgttcataggaagggatccacacgg
gctttcccaccacatcatccacttattccggtggactatcaactcaccggccaacccgta
ttagtgggcggtacaatgggcacttgcagctacgtgctaacaggtaccgagagaggaatg
catgaaacatttggatctacttgccatggtgcggggcgtgcattgtcacgtgctaaatcc
cgacggaatctagactataaagatgtacttgaaaagttagaagaaatgggaatcgctata
cgtgtagcttctcccaagcttgttatggaagaggctccagaatcctataaagatgtgact
gatgtcgttgatacatgtcatattgctggcataagcaaaaaatgtataaaattacgtcca
attgcggtcattaaaggttag
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