Anastrepha ludens (Mexican fruit fly): 128864997
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Entry
128864997 CDS
T10909
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
alud Anastrepha ludens (Mexican fruit fly)
Pathway
alud03018
RNA degradation
Brite
Enzymes [BR:
alud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128864997
Messenger RNA biogenesis [BR:
alud03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128864997
Spliceosome [BR:
alud03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128864997
Complex C
U4/U6.U5 tri-SnRNP related factors
128864997
Ribosome biogenesis [BR:
alud03009
]
Eukaryotic type
Pre-60S particles
Helicases
128864997
Transfer RNA biogenesis [BR:
alud03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128864997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128864997
NCBI-ProteinID:
XP_053960806
LinkDB
All DBs
Position
5:48235703..48239725
Genome browser
AA seq
1029 aa
AA seq
DB search
MADVDDLFDCFNEDNEESVNINPVVELDKAEADSSTEKGKADIGEKRGIASVKESKEDVE
IPQKRLKETESILDDICVDALRSRIAVHVIESPESCTHEVAVYPGQEYIPLQSITGPPAK
EYPFVLDPFQKEAILCIDNQQSVLVSAHTSAGKTVVAEYAIAKSLGCKQRVIYTTPIKAL
SNQKYREFNEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEI
HYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPT
PLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLQNAGEAAKGDQKGRKTGIRGVDSG
QSNIFKIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDFNTAEEKRLVDEVFNNAMDV
LSEEDRQLPQVENVLPLLKRGIGIHHGGLLPILKEIIEILFGEGLLKALFATETFAMGLN
MPARTVLFTAPRKFDGKNFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPSIGRG
IVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPELYKQVQDKQS
ELEKIKIKEEHSVASYHHIREQLDSYGKQFKRWITKPEYLLPFLQPGRLIKVQNDKEEFD
WGIVVNFKKQTNNARNPMKAETVIVVDVLLHVTEESAKADEPKPCKPGQKGNMEVVPVLH
TLISQISSLRVYYPNDLRPADNRRSVLKTIAEVKKRFPKGPPLLNPVTEMNIKSAEFKQV
VESIDKFEERLFAHPLHNSPELNKIYERYTQKIKVQEELKEVKTKLKEARSLLQMDELKH
RKRVLRRMEYCTAADVIEFKGRVACELSSADELLITEMIFNGIFNDITTPQAVALLSCFV
CDEKSSETPKATEELSGPLRSMQDLARRIAKISTECKLTIDEESYVEKFKPFLMDVVLAW
CKGASFLSVCRMTDIFEGSIIRCMRRLEELLRQLCQAAKTIGNTELENKFSEGVRLLKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttgatgatttgtttgactgtttcaatgaggacaatgaagaaagtgtaaat
atcaacccagtggtagaattagacaaagcggaagcagacagttcaactgagaaagggaaa
gctgacatcggtgaaaaacgaggaatcgcttcagttaaagaatcaaaagaagatgtagag
attccacaaaaaaggctgaaagaaactgaatcgatattggacgatatttgcgtggacgca
ttacgttcccgtattgctgttcacgttatcgaaagtccggagtcgtgcacacatgaagta
gcagtatatccaggtcaagaatatattcccttacaatctatcacaggaccaccagcaaaa
gagtacccatttgtattggatccttttcaaaaagaagcaatcttgtgcattgacaatcaa
cagagtgttttagtatcagctcacacatcggcaggaaagaccgtggtagccgaatatgct
attgcgaaatcgttaggctgcaaacagcgagtaatttataccacacccattaaggcgcta
tctaatcaaaagtatcgagaattcaatgaagaattcaaagatgttggactagttaccggt
gatgtgacgataaatccatcggcgtcttgtcttatcatgaccacagaaattttgcggaat
atgttgtacagaggaagtgaaattatgcgtgaggttggttgggtcgtattcgacgaaatt
cattatatgcgagacaaagagcgaggtgttgtatgggaagagacattaatattattgccc
gataatgtgcgctatgtatttctttccgccacaattcccaatgcccgccaatttgcagaa
tgggtttgtcacctccacaagcaaccgtgtcatgtagtttatacagattaccgacccacc
ccgctacaacattatatattccctgctggtggcgatggcatacatcttatagtcgatgaa
aaaggacaatttaaggaagataattttacaacagcaatggccgttttacaaaacgctggt
gaagcagctaaaggcgaccaaaaagggcgtaaaactggtattagaggcgttgacagtggc
cagtcaaatatttttaaaatagtcaaaatgataatggaacgtaactttgcaccagtaata
attttttcatttagtaaaaaagattgcgaggtgtacgctatgcagatggcaaagttagat
ttcaatactgctgaagagaaaagactagttgatgaagtattcaacaatgctatggatgta
ctctctgaagaggatcgtcaactaccacaggtggagaatgtattaccgttgttgaaacgg
ggcattggtatacatcatggtggtctcttgcctattctcaaagaaattattgaaattttg
tttggtgaaggcttacttaaagcgctttttgcgactgaaacatttgctatgggcttaaac
atgcctgctcggactgtacttttcacagcaccgcgcaaattcgatggaaaaaactttagg
tggatttcttcaggagaatatatacaaatggccggtagagctggtcgtcgtggtctggac
gataaaggtattgttatcttaatgattgacgagaaagtctcaccatcaattggtcgtggc
attgtgcaaggaaaagcggatcccataaattcagcatttcatttaacttacaatatggtg
ctgaatttgctgcgtgtcgaagaaattaatcctgaatatatgttggagcgttcattcttt
cagttccagaatcaatcctcaatacccgaactgtataagcaagttcaggataagcaatct
gagttagaaaagattaaaattaaagaagagcatagtgttgcatcgtaccatcatatacgt
gaacaactcgattcttatggcaaacaattcaagcgctggattacgaaacctgaatatctt
ttgccatttttgcagcctggtcgtcttataaaagttcaaaacgataaagaagaatttgat
tggggtatagttgtaaattttaaaaagcaaacaaataatgcacgaaatcccatgaaagcc
gagacagttatcgtagtcgatgtcttactacacgttaccgaggaatcagcgaaagcagat
gaacctaaaccatgcaaacctggccagaaggggaatatggaagttgttcctgtgcttcac
actcttatatcacaaatctcttctctccgcgtatattatccaaatgatctgcgaccggct
gataatcggcgtagtgtcttgaaaactatcgctgaagtgaaaaaacgttttcctaaagga
ccacccctccttaatcctgttaccgaaatgaatataaaaagtgctgaattcaaacaggtt
gtcgaatctatcgataaattcgaagaaagactgttcgcacatccgttgcataactctcct
gaactgaacaaaatttatgaacgctacacccaaaaaataaaagtacaagaagaacttaaa
gaggtaaaaacaaaattgaaagaggcgcgcagtttgttacagatggacgagctgaaacac
cgaaagcgtgtattgcgtcgtatggaatattgtacagcggctgatgtgattgagtttaaa
ggacgtgttgcttgcgagttaagctctgcagatgaactgctaataacagaaatgatattc
aatggaatttttaatgatattacaacaccacaggcagtggcactactgtcctgtttcgtt
tgcgatgaaaagtcgtcagaaacccctaaggcgacggaagagctgtcgggtccactacga
tcaatgcaggatctggctcgacgtattgccaaaatttcaactgaatgcaaattaactata
gacgaggagagttacgtggaaaaattcaaaccatttcttatggatgtagtgttggcttgg
tgtaaaggtgcctcgtttctgagtgtctgcagaatgacagatattttcgaaggttcaata
attcgctgtatgcgtcgtttagaagaattgctgaggcagttgtgtcaagcagccaaaaca
attggtaacacagaattggaaaacaaattctccgaaggtgtaagactcctaaaaagggat
attgtttttgcggcttctttatatttgtaa
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