Anastrepha ludens (Mexican fruit fly): 128865344
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Entry
128865344 CDS
T10909
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
alud Anastrepha ludens (Mexican fruit fly)
Pathway
alud03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alud00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128865344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alud03019
]
128865344
03032 DNA replication proteins [BR:
alud03032
]
128865344
Messenger RNA biogenesis [BR:
alud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128865344
mRNA cycle factors
Common to processing body (P body) and stress granule
128865344
DNA replication proteins [BR:
alud03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
128865344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Dsl1_C
Motif
Other DBs
NCBI-GeneID:
128865344
NCBI-ProteinID:
XP_053961541
LinkDB
All DBs
Position
5:2315615..2330167
Genome browser
AA seq
1245 aa
AA seq
DB search
MEQGFSSGGSNASGDSVGGFGRNSAIGNPSADIVRGGDIIYNKNVTHNSGGNGNGLTPEV
KEIYRSLYIIAKQLDDEKKHISTISQLFQHDLEEKRAQLVQLCKKIIFKDYQSVGKKARE
IMWRKGYYEFIAYVKKNWHKELKDITQSGTQDNLLKVERFLCAGISNYKRMAAKMEEIYD
LDLKYLIDFSIISDGYVREIEHKQSDDDVGGGDISAAHAVDKSLEAVSFALDTIHSALLS
LGDLHRYFLDFRIDTRLKVTKQQAAKYYFEAFKLNPAIGMSQNQLGTLYYGQNHDLDSIY
HYLYSLVSIVPFELSENNVCKLFVAHAEYLEKLDPEKIEFSLQDFYARFYLIVDIFFFDK
EVPDFNSLCHCVLVDLRKVLCSKAFTIEEGCIFKIVSILFFCLSKLKMINSQKVYSLNAF
LVAVCSDLMDACIVNLEQTILAKSVENEEFHGMYADKFEEFNMVVRKSRNEYKNWLVTIG
EADRKEKKANAKPSLKEFSSDSRESQRSNDDYVIKTQDSHKHAKMDGGTDKNVDPISTRS
SDEAKESDLKTPLSCKSKKRGMKLRRRRRKIAQSDDSSCYDTESDMDTDFSTDDEDYTDL
SSNFDTDFSDIEVEPVADDREEADETDFAKRTTKSELQAQNAPRLSSAASKESLTSNEGV
GPTFSDNEDIVIEEEKIIYPDEQQAQLVKQRTDSQEVDSEELLRSFEVLQLNGSGSLNFR
NTDNEESMPPVAEYNEKRQPVDDVNLNPGEPPKKLVYRNKYTKINPNIIVEFARHEPTMR
ALKILYDWLRINHEILFGCYHSNPEFIHKIMKLLNYCNIDIFTRKVYFEREFLTTPNVRT
QLGDLFDVRANVPLAEDFVFKNFDIFQGTQLTLDWETTIREHVTPEEECILRIFKMVDFG
FFICKQKKFNYRFCVKTRRFTENAKKKREEKKSSSRRRERRTMKNATRKRAEGRTRRYSD
RKNGIVRKSYTSNEEKDTVEECKKVPRKGYLRNRNIEKSVASCNSGGAGGGGGGGTSAST
TTNSAVCDKILMQSSSGADEERSEAMSKKCEIMGKLWLKNEVETLEEELRKNPLNIIMTP
FLVVDAKALTEYNGIVKNLVKTKKFIVLIPNAVLNELDDLKKRSENARNVIRWLEQEFKH
GNRHLRAQRDNENLTLSLLKIPRKLDRDASVFLQIAQFCNHLVANHSDPKSTEFQTNVVT
YLSGDSLYEKQRNQTNFSFTGILDAIPVRYEQISNFYAKFKANKK
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggaacagggtttcagttccgggggctcgaatgcctccggcgatagtgttggaggcttt
ggccgaaatagtgctattggaaatcccagtgcagacattgtgagaggtggtgatattatt
tacaacaagaatgtcacacataacagtgggggcaacggtaacggacttacgcctgaagtg
aaggagatctatagatctctgtatattattgccaaacaactggacgacgagaaaaaacac
ataagcactatttcccaactatttcaacatgacctggaagagaagcgtgctcagctggtg
cagctttgcaagaaaatcattttcaaggattatcagtcggtgggcaaaaaagcgcgtgaa
attatgtggcgcaaggggtattacgaattcattgcttacgtgaagaaaaattggcataaa
gagttaaaggacatcacacagtcgggcacccaggacaatctgttaaaagtagagcgcttt
ttatgcgctggcatatcgaactacaaacgtatggctgccaaaatggaggaaatctatgat
ctagacttgaagtacttgatcgattttagcataattagcgatggttacgtgcgcgaaatc
gagcacaagcagtcggacgacgacgttggcggtggcgacattagtgccgcacatgcagtg
gataagagtttggaagcagtttcatttgctttggacaccatacattcggcccttttaagc
ttaggcgacttgcatcgctatttcttggattttcgcattgatacacgccttaaagtcacc
aaacaacaggcggctaagtactatttcgaagcgtttaaattgaaccctgctattggtatg
tcgcaaaatcaacttggcactctatactatggccagaaccatgatttggattccatttat
cattacttgtattcattggttagcattgtgccattcgagttgagtgaaaacaatgtttgt
aagctattcgtcgcacatgctgagtatttggagaaattggatccagagaagatagaattc
agtttgcaagatttctatgcacgcttctatttgattgtggatatatttttcttcgataaa
gaagtgcccgattttaattcactctgccattgtgtactggtggacctgcgtaaagtgctc
tgctcgaaagcgttcacaatcgaagaaggctgcattttcaaaatagtctcaatactcttc
ttttgcttgtcgaaactgaagatgataaactcgcagaaggtttactctttaaatgctttt
ctagtggccgtatgctctgacctaatggatgcgtgtattgtgaatctcgagcaaacaatc
ttagccaaatccgttgagaatgaggaattccatggcatgtatgccgataagtttgaggaa
ttcaatatggttgtgcgtaagtcgcgcaacgagtataaaaattggcttgtaaccatcggt
gaagctgatcggaaagagaagaaagctaacgcaaagccatctttaaaagagttctcatct
gattctcgcgagagtcaacgctccaatgatgactatgtcatcaaaactcaggatagccat
aagcatgccaaaatggatggtgggacggataagaatgttgatccgatatcaacgcgttca
agcgacgaggctaaagaaagcgatctaaaaaccccgctttcctgcaagagtaagaaaaga
ggtatgaaattgcgtcggcggaggcgcaaaattgcacaatcagatgatagttcctgctat
gataccgagagtgatatggatacggactttagcacagacgatgaggactataccgatctg
agctcgaatttcgatactgatttcagcgatattgaagttgagccagtagctgatgaccga
gaggaggcagacgaaactgattttgcaaagcgcactactaaatcagaactgcaagcgcaa
aatgcacctcgtttatcctctgccgcttccaaggaaagcctcacttcgaacgaaggcgtt
ggtccgactttctctgataatgaagatatcgtaattgaagaggagaaaattatttatccc
gatgaacagcaggcacagcttgtaaagcaacgcactgactcacaggaagtcgatagcgag
gaattgctgcgcagcttcgaagttttgcagttgaatggcagcggctcacttaactttagg
aataccgacaatgaagaatcaatgccgccagtcgctgaatataacgaaaaacgccagcct
gttgacgatgtgaatttaaatcccggcgagccgccaaagaaattagtttatcgcaataag
tatactaaaatcaatcccaatattattgttgagtttgcccgtcatgagccgactatgcgt
gcattgaaaatcctttacgattggctacgcatcaatcatgaaatactcttcggctgctat
cactccaacccggagttcatacacaaaattatgaagttgttaaattattgcaacatcgac
attttcactcgcaaagtgtacttcgaacgtgagtttttgactacgcccaatgtacgcacc
caactcggggacttatttgatgtgcgtgccaatgttccattagctgaggatttcgttttc
aaaaatttcgacattttccaaggcacacaacttactctagattgggagacaactatacgc
gaacatgttacacccgaagaggagtgtattttgcgcattttcaaaatggtcgatttcggt
ttctttatttgtaagcaaaagaaattcaactatcgcttttgcgtaaaaacacgccgtttt
actgagaatgcgaagaagaagcgtgaggagaagaaatcatcctcgcgccgtcgtgagcga
cgcacgatgaaaaacgctacacgcaagcgggccgaaggacggactcgtcgctactcggat
cgcaagaatgggatcgtacgcaagagttatactagcaacgaagaaaaagatactgttgag
gagtgtaagaaagtgccgcgcaaaggttacttacgtaatcgtaatattgaaaaatcggtg
gccagctgtaattccgggggtgctgggggcggcggtggtggtggcacgtctgcctcaacg
accacaaacagcgctgtttgtgacaaaatattgatgcaatcgagtagtggcgctgacgaa
gagcgttcagaggcaatgtcgaagaaatgcgagattatgggcaagttgtggctaaagaac
gaggtcgagacacttgaggaagagctacggaagaaccccttgaatatcatcatgactccc
ttcttggttgtcgatgcaaaagctttgactgagtataatggcattgtgaaaaatttggtg
aaaaccaaaaagtttattgtgctcataccaaatgcagttttgaatgagttggacgatttg
aaaaagcgcagtgaaaatgcgcgcaatgtcatacgttggctggaacaggagtttaagcat
ggaaatcgtcacttgcgcgcccagcgcgataatgagaatttgaccctatcgctgttgaaa
atacccaggaagttggatcgcgacgctagcgtctttctgcagatagcccaattttgtaac
catctcgttgccaatcattctgatcccaaatctaccgaatttcaaacaaatgttgtcact
tacttgtccggcgattcactttatgagaaacaacgcaatcaaacgaatttcagcttcacg
ggcatattggatgctataccagtacgttatgaacagatatctaatttctatgcgaaattc
aaggccaacaagaaatga
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