Anastrepha ludens (Mexican fruit fly): 128866662
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Entry
128866662 CDS
T10909
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
alud Anastrepha ludens (Mexican fruit fly)
Pathway
alud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128866662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alud03019
]
128866662
03041 Spliceosome [BR:
alud03041
]
128866662
Messenger RNA biogenesis [BR:
alud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128866662
Spliceosome [BR:
alud03041
]
Complex B
Other components
Prp19-related factors
128866662
Complex C
128866662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
Mad3_BUB1_I
TPR_8
TPR_15
TPR_10
PPR
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
128866662
NCBI-ProteinID:
XP_053963539
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All DBs
Position
6:110330118..110333685
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AA seq
879 aa
AA seq
DB search
MTLIDKPLVAVDIDFPEEDVPYEEEILRNAYSVKHWLRYIEHKSKSPNFGVNIVYERALK
ELPGSYKIWYNYLRTRRKQVRGRPLTDPMYDEVNNTFERALVFMHKMPRIWMDYGVFMTA
QCRITRTRHVFDRALRALPITQHHRIWPLYLKFVRRFDIPETALRVYRRYLKLCAEDAEE
YIEYLTEVELLDEAAQQLASVVDNEHFVSKHGKSNHQLWNELCDLISKNPDKVHSLNVDA
IIRSGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EEVSLNRRMEMVANDPHATEEDDIDVELRLARFEYLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLYEGKPHEIINTYTEAVQTVQPKLAAGKLHTLWVEFAKFYESNEQVEDARVVFERG
TEVEYVKVEDLAAVWCEWAEMEIRQENFEGALRLMQKATAMPKRKVAYHDDTETVQMRLY
RSLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAY
EKGIALFKWPNVYDIWNAYLTKFLKRYGGTKLERARDLFEQCLENCPPEHAKYFYLLYAK
LEEEHGLARHAMAVYDRATSAVKSEEMFDMYNIFIKKAAEIYGLPRTREIYEKAIEALPE
ENMRPMCVRFAEMETKLGEIDRARAIYAHCSQVCDPRITAEFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQFLNQTGASNAAADGGGDAMRLLEAKAAAEQQARQQQT
LKAQTSGNIMFVRGETQGGNAKDKVVNPDEIDIGDSDDEDEEDVDDDAVNGAANGADKRG
GNEENVIAAKRLRIEQQAIPAKVFGSLKKATDEDDQDAD
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcattgataagccgttagttgcagtcgatattgatttcccagaggaagatgtg
ccttatgaggaggagattttgcgtaacgcatactccgtgaaacattggttgcggtacata
gaacacaaatccaaatcgccgaactttggcgtgaacattgtttatgagcgcgcacttaaa
gagttgcctggcagctacaaaatttggtataactatttacgtacgcgccgtaagcaagtg
cgtggtcgccctctaaccgatcccatgtacgatgaagtcaacaataccttcgagcgagcg
ttagtgtttatgcacaaaatgccacgcatttggatggattatggcgtatttatgacagca
cagtgccgcatcacacgtacccgacacgtgtttgatcgtgctttgcgtgcattgcccatt
actcaacatcatcgcatttggccgctctatttaaaatttgtgcggcgtttcgatatacca
gagacagctctgcgcgtttataggcgctacctgaagttgtgcgcagaagatgcggaagag
tacattgaatatctgactgaggtagagctattggatgaagctgctcaacaattggcatca
gtggtggacaatgaacatttcgtgtcgaagcatggcaaatcaaatcatcagttatggaat
gagttatgcgatttgatttcgaaaaatcctgacaaggtgcattcgttgaatgtggacgcc
ataatacgcagtgggctcaggcgttatacggaccagcttggacatctttggaattctttg
gccgattactatgtacgttcgggtctgtttgatcgcgcacgcgacatttatgaggaggcc
atacaaaccgttacaacagtgcgtgattttacacaagtgttcgatgaatacgcccagttc
gaggaggtctcgttaaatagacgcatggaaatggtggccaacgatccacatgccaccgaa
gaagatgacattgatgtggaattgcgactggcgcgcttcgagtatcttatggagcgtcgt
ctgttgcttttgaacagtgtgctactgcgccagaacccacacaatgtacatgagtggcat
aagcgcgtgaaattgtatgagggcaagccgcacgagatcatcaacacatacaccgaggct
gtgcaaactgtgcaaccaaagttggctgctggcaagctgcatacattgtgggtggaattt
gcgaaattttacgaatcaaatgagcaagtagaggatgcgcgcgttgttttcgagcgtggc
actgaggtggagtatgtgaaggtggaagatttggccgcagtatggtgtgaatgggccgaa
atggaaatcaggcaagagaatttcgagggtgcattgcgcctaatgcagaaagccaccgcc
atgccgaaacgtaaagttgcctatcatgacgacaccgagaccgtacagatgcggctatat
cgttcgctgaaagtttggtctatgtacgccgatttagaggaatcctttggcactttcaaa
acatgtaaagcagtctatgatcgtataattgatttaaaaatttgcacacctcaaataatt
atcaactatggcctctttttggaagagcataattattttgaagaagcttttcgcgcctat
gaaaagggtattgcgctatttaaatggccaaatgtatacgatatttggaatgcatatttg
acgaaatttctcaaacgctatggtggcacaaagctggagcgtgcgcgcgatcttttcgaa
caatgtttggaaaattgtccgcccgaacatgccaagtatttttatttgttatatgcgaaa
ttggaggaggagcacggtttggcgcgtcatgccatggccgtatacgatcgcgcaacaagc
gccgtcaagtcagaggagatgtttgacatgtacaatattttcataaagaaagctgcggag
atctacggcctgccgcgcacgcgcgaaatctatgagaaggccattgaggcgttgcccgaa
gagaatatgcggcccatgtgtgtgcgctttgcagagatggaaacaaagctaggcgaaatt
gatcgtgcgcgcgcaatttacgcgcattgctcgcaggtgtgtgatccacgtataactgca
gagttttggcaaacatggaaagagttcgaggtgcgccatggcaatgaggataccatgcgc
gaaatgctgcgcatcaaacgttcagtgcaagccacgtacaatacacaggtgaatatgatg
gccgcacaatttctcaatcaaacgggcgcaagcaatgcagccgcagacggtggtggtgat
gcgatgcgtctacttgaggctaaggctgcggcagagcaacaggcacgccaacaacaaaca
cttaaagcacaaactagtggcaatattatgtttgtgcgtggcgaaacgcagggtggcaac
gcgaaagataaagtggtcaatccggatgaaatcgatattggcgatagtgacgacgaggac
gaagaggatgttgatgatgatgctgttaatggggcggcaaatggcgctgacaagcgcggc
ggaaacgaagaaaatgttatagccgccaaaaggttgcgcatcgagcagcaagcgataccg
gcaaaagtgtttggcagcttgaagaaagccacagatgaagatgaccaagacgcagattga
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