Anastrepha ludens (Mexican fruit fly): 128868003
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Entry
128868003 CDS
T10909
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
alud Anastrepha ludens (Mexican fruit fly)
Pathway
alud04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
alud00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128868003
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alud00536
]
128868003
Glycosaminoglycan binding proteins [BR:
alud00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128868003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
128868003
NCBI-ProteinID:
XP_053965663
LinkDB
All DBs
Position
6:121741400..121754659
Genome browser
AA seq
1549 aa
AA seq
DB search
MRFKPLHLLCFACVLCVLLECAWAENSAGAHVGKRKTRTKKVKKYRKAFNERPQAEEPQP
EADLPGTDEFEAYDYNNYEDVDVDADVNVGGTNGFDTHQEASNPSNVPNVETPANVVGAF
SCLYEGNWYRDGDEFTSERNGCTNSCSCTEGKVICRETENCMHIPPATSTTTTTTTTEPN
LPDTAEDNPYAGVSTGPRGLPGYPGAQGRPGEGGIPGTPGNPGVPGNPGVPGPIPDMSYY
HQQLAAEYANSDKGPSSLPFVPEFQYLQSSVGAVGPRGAPGSSGPVGPQGFQGMRGEPGE
PGPQGPPGLMGPRGLPGPPGKDGSPGEDGEPGLQGAAGIPGPRGLPGMPGIPGLKGHHGL
PGIDGAKGELGAPGEKGGTGPMGAVGPTGPQGPAGPRGERGREGPPGPQGARGLDGNPGA
AGQPGSIGKPGPPGFPGSPGAKGDWGHPGPKGDQGLQGPRGEAGRPGAAGEPGMSGPPGK
DGLHGDKGSMGAPGIAGPQGFPGPRGPDGIPGSPGEPGIKGTPGQPGERGYKGDQGIKGE
SGQSGPRGLPGTVGPEGKRGKRGMRGPTGPSGPTGERGPQGLPGISGPDGPIGPKGTPGD
RGIQGPHGIKGSPGDVGQPGIPGVQGLRGLPGRIGPPGKPGPVGERGIPGADGRPGEQGL
QGLQGLPGPMGIPGDKGFTGEPGKNGEPGPPGPQGPHGDSGKDGLPGAQGPRGPPGQDGE
RGEPGTAGPRGFQGLPGVAGNPGAPGKDGSAGPPGPQGLVGPSGLRGERGYPGERGPVGQ
PGTPGERGEPGAPGHDGPQGLPGKLGSKGHMGAPGMLGLPGPRGLSGLPGEKGERGSIGP
FGPEGPPGRPGDRGPQGMVGPPGAPGESGERGEPGSPGQPGEQGAAGGPGERGPIGLQGP
PGYPGAPGLAGLPGAKGDRGLMGIKGEQGMLGPHGPPGEQGLQGPVGLSGLKGARGEPGL
RGEPGLSGLPGRPGDQGQPGQPGSQGLPGVAGFPGAKGNPGEPGRPGNPGSQGLQGATGL
EGQKGETGNDGPPGPAGNPGPPGNVGERGMPGLSGPPGAAGLRGLRGVPGEAGPQGRPGK
DGAPGAQGLQGPQGLPGPMGESGPEGPAGKAGPPGIAGRVGDKGPQGQVGNPGPPGNPGL
PGPPGAMGPVGLQGERGPKGDLGLPGVEGPQGLRGKSGPPGVEGPKGEHGEPGPKGIKGH
RGLIGLQGMPGQAGLKGDSGPPGIPGQPGKSGEMGMRGPQGRDGNPGPMGPPGQPGPRGL
SGGEGKPGPIGPAGPPGPPGSPGESVGYDVAALTALLNQGQTKGIDFQSDQPNLLPEGLS
DDEKEAMVIKAFEHLKASFERLRRPNGQQSAPAKTCRDLFAAYPDYKSGEYWIDPNEADP
RDAILVYCERETRGSCILPKPQETPVLSYKGAERETWLSEMPGGMKITYKTDSHQLGFLQ
LLSAKASQRITFNCRNTIGYLDEDKTNDRNGLKLLSWNDAELTPKGPLRLRFEAESDECR
HRSNSWAKTVITYKTEKPQRLPIVDVKIRDVGEANQQFRIELGPVCFYN
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atgagattcaagcctttacatctcctatgcttcgcatgcgttctgtgcgttttgcttgag
tgtgcttgggcggagaactctgctggagcgcatgtaggaaagcgaaaaacacgtactaaa
aaagtgaaaaaataccgtaaagcatttaatgagcgaccgcaagcagaggagccgcaaccg
gaagccgatttaccgggcacagatgagttcgaagcatacgattacaacaactacgaagat
gtggacgtggatgccgacgtgaatgtaggcggcactaacggtttcgatacccaccaggaa
gcaagcaacccgtcgaatgtgccaaatgttgaaacccccgccaacgttgtgggtgctttt
tcatgtctgtatgagggtaattggtatcgcgatggtgatgaatttaccagcgagcgcaat
ggctgcacaaattcttgttcttgcactgaaggcaaggtgatctgtcgcgagactgaaaat
tgcatgcacatcccaccagcaacttccaccacaacaactaccacgacgacagagcctaat
ctcccagataccgctgaagacaatccctatgctggcgtttccactggcccacgcggctta
cctggttatccgggtgcacaaggtcgtccgggagagggtggtatacctggtacgcctggt
aatccaggtgtgcctggaaatcctggcgtgcctggcccgataccggatatgagttattat
caccaacagttggccgctgagtatgcaaattcggataagggtcccagttcgttaccattc
gttccggagtttcagtatctgcaatcatctgtgggagctgtcggtccacgtggtgcacct
ggtagctcaggtcctgttggccctcaaggttttcaaggcatgcgtggtgaacctggcgag
cctggaccacaaggtccacctggtttgatgggaccacgcggcttacctggtccaccaggt
aaagatggttctcctggtgaggatggtgaacctggattgcaaggtgctgcaggtatacca
gggccacgaggcttacccggtatgccaggtattcccggtttgaaggggcatcatggcttg
cctggtattgatggcgcaaaaggtgagctaggtgctcctggtgagaaaggtggcactggc
ccaatgggtgctgttggccctacaggcccacagggccctgctggtcctcgtggggagcgt
gggcgtgaagggccaccgggtccacagggcgccagagggttagatggtaatccgggtgct
gcagggcaacctggttctattggcaagcctggtccaccaggtttccctggtagtcccggt
gccaaaggcgattggggacatccaggaccaaaaggtgatcaaggattgcagggtccacgc
ggtgaggctggacgtccaggcgctgccggtgagcctggcatgtcaggaccgcctggtaaa
gatggtttacatggtgacaaaggttcgatgggtgcacctggtattgcaggaccgcaaggt
tttcctggaccccgtggtccggatggcatacctggcagtccaggagaacctggtataaaa
ggcacaccagggcaacctggcgaacgtggttataaaggcgatcaaggtattaaaggagaa
tctggtcaatcaggtccgcgtggcttaccaggtacggtagggccggaaggaaaacgtggt
aaacgcggtatgcgaggacctaccggaccttcaggcccaactggcgaaagaggaccgcaa
ggattgcctggaatttctggtccagatggtcctattggtccaaaaggtactcccggcgac
cgcggcatacaaggaccacacggcataaagggaagtccaggcgatgttggacaacccggt
ataccaggagttcaaggtttgcgtggtttgccaggacgtataggacctccaggaaaacct
ggacctgtgggtgagaggggaattcctggcgccgatggaaggcccggtgaacaaggtctg
caaggcttgcaggggctacctggaccaatgggcattcctggcgataaaggtttcaccgga
gaacctggtaaaaatggtgagccaggtccaccgggtccgcaagggccccatggagatagc
ggcaaagatggtttgcctggcgcacaaggtcctcgtggtcctcctggtcaagatggtgag
cgtggagagccaggcactgctggccccagaggtttccaaggtctacctggcgtcgctggt
aatccaggcgctccaggaaaagatggatctgccggaccacctggcccacaaggtcttgtt
ggcccttctggattacgtggtgaacgtggttaccctggtgaaagaggtccagtaggtcag
cctggaacacctggagagcgtggagaacctggtgcgccagggcatgacggaccacaaggt
ttacctggaaaactaggatctaaaggacatatgggagcgccaggaatgttgggattgcct
ggtccgagaggactttctgggttgccaggagaaaaaggtgagcgtggtagcataggacca
tttggtccggaaggtccaccaggccgtccaggcgatcgtggcccacaaggaatggtagga
ccacctggagcacccggtgaatcaggagaaaggggtgagcctggaagccctgggcaacca
ggtgagcaaggagcagcaggtggtcctggtgaaagaggaccaattggtttgcagggccca
ccaggttatcctggagccccaggcttggcaggattacccggagcaaaaggcgatcgtggt
ttaatgggtatcaaaggcgaacaaggcatgctaggacctcatggtccccccggagagcag
ggtctgcaaggtcccgtgggcttaagtggtttgaaaggtgctcgaggtgaaccaggactc
aggggagaaccaggattaagcggattgcctggcagacccggtgatcagggtcaacctgga
caacccggaagccaagggttacctggtgtggctggatttccaggagctaagggaaatcct
ggggaacccggtagaccaggaaatcctggatctcaaggtttgcaaggtgcaactggtttg
gagggacaaaaaggtgaaacaggcaatgatggacctcctgggccagcgggtaatccagga
ccacccggtaatgttggtgaacgcggaatgccaggcttgtctggtccaccaggcgcggca
ggtttgcgtggcttaagaggagttccaggtgaagcaggtccacaaggtagacccggaaag
gatggtgcaccgggagcgcaaggcctgcaaggaccacaaggcctaccgggtccaatgggt
gagtctggacctgaaggaccagctggtaaagctggacctcctggaattgctggtcgtgtt
ggtgataaaggacctcagggacaagtaggaaatcctggaccaccgggaaatcctggtctg
cccggtccacctggtgccatggggccggtaggtttacaaggtgagcgtggaccaaagggc
gatcttggtttaccaggtgttgaaggaccacaaggcctgcgtggcaaatctggcccacca
ggtgttgaaggaccaaagggtgaacatggtgagcctggtcctaaaggtatcaagggtcat
cgcggtcttatcggtttacagggtatgcccggccaagcaggtcttaaaggtgactcaggt
ccaccaggcatacccggtcagccgggaaagtcaggagagatgggaatgcgtggtccacaa
ggccgcgatggcaaccctgggcctatgggcccgccaggtcaacctggtccacgtggctta
agcggcggtgagggtaaacctggacccataggacccgccggtcccccaggaccaccaggc
tcacctggagaatcggtcggatacgatgtagctgcacttactgctttactcaatcaaggc
caaacaaaaggcatcgattttcaaagtgaccaaccgaatctcctaccagaaggactttcc
gatgacgaaaaggaagcgatggtaatcaaggcgttcgaacacttgaaggcatcttttgag
agattgcgaagacccaacggtcagcaatcggcaccagccaaaacgtgtcgtgatcttttc
gcggcctatcctgactacaaatctggcgaatactggatcgatccaaatgaagctgatcca
cgtgacgctatcttggtgtattgtgagcgtgagacgcgcggttcgtgcatactaccgaag
ccacaagaaacgccagtgttaagctacaaaggcgctgagagggaaacgtggctgagtgaa
atgcctggaggtatgaaaatcacctacaaaaccgattcgcatcagttgggcttcctgcaa
ttgctttccgctaaggcctcacaaagaatcactttcaattgtcgaaatacaattggctat
ttggatgaagacaaaacgaacgatcgaaatggcctaaagctgttgtcatggaatgatgca
gaattaacgccaaagggaccgctgcgtctgcgctttgaagcagaaagcgatgaatgcagg
catcgctcgaattcttgggccaaaacggtgatcacatataaaactgagaagccacagagg
ctgccaattgttgatgttaaaatcagagatgttggcgaggctaatcaacagttccgcatc
gaattgggtccagtatgtttttataattga
DBGET
integrated database retrieval system
