Anastrepha ludens (Mexican fruit fly): 128871962
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Entry
128871962 CDS
T10909
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
alud Anastrepha ludens (Mexican fruit fly)
Pathway
alud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128871962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alud03019
]
128871962
Messenger RNA biogenesis [BR:
alud03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
128871962
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Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
RuvB_N
Motif
Other DBs
NCBI-GeneID:
128871962
NCBI-ProteinID:
XP_053970145
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All DBs
Position
2:complement(82563766..82567242)
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AA seq
903 aa
AA seq
DB search
MTPTIATKVGEETGTLAEQEKKVPNVTSLGNFASVEEFAKNGLAEIMVATKSTNSFPQGA
ARDLYCAHPTFGRIVDEQSHRILGLISKVLKWQNVKGNIQRRQQDEQFEMLLECNDAIME
RLNSNLDELAGIKKNLKTIVVESHLNVASGKPSSGSGAGSWNLKKNEVSPIAARLITAKN
IARPQLKFKVAVDNSALTPFVPRIKDKPNSLKPLAVLPEYDEHGNIASYLHPYEFELMKL
EVPVTQLKRTNPQVPSKMDETELLYVDTIHKLNTAVEELRKHTEIAIDVEHHSYRTFQGF
TCLVQISTRNKDYLFDALELRDEMHVLNVVFTDPKIVKIFHGADMDIEWLQRDLSLYIVN
MFDTHQAAKALNYARLSLSYLLKHYCDLEVDKTFQLADWRIRPLPKELVAYARQDTHYLL
YIFDRITNDLLDAGNNQPNLLRSIYQRSSEICKKRYVKPHMTADSHMDLYRKSKRIFDNR
QLYALREVFQWRDSMARQEDESYGYVLPNHMLLQISESLPREMQGILACCNPIPPLVRQN
LHVLHQIVLRAREQPLVKPVLETETIHRVATTNSKDYNCKLYCPHDLSHSEEFRDDLPTL
LNFRNDAVISSPAKVDVKMAKPVLSIYETPESTDDDEDQRKQKQLHSAIKFISPYQRYLA
MLPLAEKEKAEEAARIEAENKKRRLCPAANPSPVITKMEIKTEPADDNEYNLPIKEILKR
THEEAIAKKNKSNDSEEPGPKRFKNETPTDDKLKFINLPPTKKELKQANNQAPNTAADTL
TANTSNNSVHTISEDSDSGPEEIPSTSQAQPMQNTPNRQSGKKQMKNKNMKNRQKSYQSS
NKPIDLVKNFDYNSVDFKKFQGGGQRAKGMELKPQFHGKSNSNKANNKKFNKLFTFSNVK
GKK
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccactatagcgacaaaggtcggggaggagactggcactttggcagagcaagaa
aaaaaagttccgaatgttacatcgcttgggaatttcgcttctgtagaagaatttgcaaag
aatggtttagctgaaatcatggtggctaccaaatcgacaaattcctttccccaaggtgct
gcacgagatttatattgcgcacaccctacctttggtcggattgtggacgaacagtcacac
cgaatacttggattgatatcgaaagttttaaagtggcaaaatgttaagggcaacattcaa
cgccgtcaacaagacgaacagtttgaaatgctcctagaatgcaatgatgctataatggaa
aggttgaactcaaatttggatgaactcgcaggtataaagaaaaatctaaaaactattgtt
gtagaatcgcatttaaatgtcgcaagtggtaaaccgtcatctggatctggtgctggaagt
tggaatttaaagaaaaatgaagtatcaccaattgccgcacgtttgatcacggcgaaaaat
attgcacgaccacaattgaaatttaaagtagcagtggataatagtgctctaacgccgttc
gttccacgaataaaagataaacccaattcattaaagccgctggcagtgttacccgaatat
gatgaacacggtaatattgcgagttacctacatccatacgagttcgagttgatgaaatta
gaagtccccgtaactcagttgaagcgcacaaatcctcaagtgccctcaaaaatggatgaa
accgaattactttatgtggatacaatacataaattaaatacggcagtggaagaactgcgt
aaacacactgaaatagcaattgatgtggaacatcattcatatcgtacttttcagggtttc
acttgccttgtgcagatctcaacacgcaacaaagattatctcttcgatgctttagagttg
cgcgatgaaatgcacgtacttaatgttgtattcactgatccaaaaatagtgaaaatattc
cacggcgctgatatggatattgagtggctccagcgcgatctttcattgtacatagtgaac
atgttcgatactcatcaagctgccaaggctttaaattatgcgcgattatccctatcttac
ttgctcaagcattattgtgacctcgaagtcgataaaactttccagttggccgactggcgc
attcgcccattaccaaaagagttggtagcatatgcgcgccaagatacccactatctactc
tatatattcgatcgcataaccaatgatttgcttgacgccggaaacaatcagccaaatttg
ctacgaagcatttaccaacgcagcagcgaaatctgcaagaagcgatatgttaaaccgcac
atgacagctgactcgcacatggatctttatcgtaagtcaaaacgtatcttcgataatcgg
cagctgtatgcgctacgggaagtgtttcaatggcgtgattcaatggcgcgccaagaagac
gaaagctacggatacgttttacctaatcacatgctgttacaaatttccgaaagtttacct
cgtgagatgcagggaatactagcgtgctgtaatcctataccgccactggtgcgacaaaac
ctacacgtgctgcatcaaattgtgttgcgagctcgagaacagcctttggtgaagcctgtg
ttggagacagaaacaattcatcgtgtagctaccactaacagcaaagattacaactgtaag
ttgtattgcccgcacgatctatcacacagcgaagagttccgcgatgatttgccgacactg
ctaaatttccgcaatgacgctgtaatttcatctcctgctaaagttgacgtaaagatggcc
aaacctgtgctgagcatttatgaaacaccggagtccacggatgacgatgaggatcagaga
aagcaaaaacaattacatagcgctataaaattcattagtccatatcaacgctatctggcc
atgctaccattggcggaaaaagaaaaagcggaggaagcggcacgcatcgaggctgaaaat
aaaaaacgtcggttatgtcccgctgcaaatccatcacctgtcataacaaagatggaaatt
aaaactgagccggctgatgataatgagtataatttaccaattaaagaaatcctcaaacgc
acacatgaagaggcaattgcgaaaaagaacaaatcaaatgattcagaggagcccgggccg
aagcgctttaagaacgaaacacctactgatgataaattgaagtttattaatttaccaccc
actaagaaggaactgaagcaagccaataatcaggcgccgaataccgccgctgataccttg
actgccaatacatctaacaactctgtacatactattagtgaggattcagatagtggacct
gaagagataccgtctacgtcacaagcccaaccgatgcagaacacgccaaataggcagagt
ggcaagaaacagatgaagaacaagaatatgaaaaaccgacaaaagagttatcagtcctct
aataaacccatcgacctagttaaaaatttcgactacaatagtgtggactttaagaaattc
caaggaggcggacaacgcgccaagggcatggaactaaagccacaatttcatgggaaaagc
aactccaacaaggctaataataaaaagttcaataagttatttacattcagcaatgtgaaa
ggtaaaaagtag
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