Anaerohalosphaera lusitana: STSP2_02057
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Entry
STSP2_02057 CDS
T06331
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alus
Anaerohalosphaera lusitana
Pathway
alus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STSP2_02057 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alus03019
]
STSP2_02057 (rne)
03009 Ribosome biogenesis [BR:
alus03009
]
STSP2_02057 (rne)
Enzymes [BR:
alus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
STSP2_02057 (rne)
Messenger RNA biogenesis [BR:
alus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STSP2_02057 (rne)
Ribosome biogenesis [BR:
alus03009
]
Prokaryotic type
rRNA processing factors
STSP2_02057 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AQT68881
UniProt:
A0A1U9NLR4
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All DBs
Position
2438911..2440440
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AA seq
509 aa
AA seq
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MSKEMLINSVQGEECRVAVVDNKKLDELYIERASLVSHVGNMYKGKIVNIEPSIQAAFID
FGLAKNGFLHISDVHPKYLSGKADKSEKIGRRQSLSKRPPIQRCLKKGQELIVQVTKEGI
GTKGPTLTTYLSLPGKHIVMMPGMSKVGVSQKIEDEDERKRLKKIIDSLELPKDFGFIIR
TAAIGATKRSLRNDVNYLTRLWKAIRKKMETSKAPAEIYKESDLVIRTIRDVFTSSISKI
VCDSEIVSKKARDFLSIIQPRLKRRVIYYDGKTPLFHKYGIEQEITNIQSSRVELNCGGS
LVIEQTEALVAIDVNSGRYRKHENAEATAHKTNMEAAKEIVRQLKLRDLGGLIVCDFIDM
RDRKNKRQVEQIFRDELKSDRARSKALRMSAFGLIEVTRQRMRPSLQSTTYLKCPRCGGK
GIIKNLESQSLELMRTLNLAVARGDIKRIEMLVEPDVASFMLNENRAAITQIETQSDKQI
LIKGDPNVLGDDFKIDCFNERGSKVQFMG
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagaaatgctaattaactctgtgcagggcgaagaatgccgtgtcgcagtagta
gataacaaaaaactcgatgaactatacatcgaacgcgccagcctggtcagccatgttggc
aatatgtacaaaggaaagatcgtaaatatcgaacccagtatccaggccgcttttattgat
tttggcctggcgaagaatggttttttgcacattagtgacgtgcatccgaaatacctgtcc
ggcaaagccgacaaatccgaaaagatcggtcgtcgtcagtcactcagcaaacgcccgccg
atacagagatgtctcaaaaagggccaggagctgatcgtacaggttaccaaagagggcatc
ggaacgaaggggcctacactgacaacgtatctgtccttgccaggcaaacatatagttatg
atgcccggtatgagcaaggttggagtttcgcagaagatcgaggatgaggatgagcgaaag
cggctcaagaaaatcatcgacagcctggagcttcccaaggatttcggctttattattcgt
acagccgctatcggagcgaccaagcgttcattgcgtaacgacgtaaattatctcacgcgt
ttgtggaaggccatccgcaaaaagatggaaacctcaaaggcgccggccgagatatataag
gaatccgatcttgtcatcagaaccattcgggacgtgtttacgagcagtatcagcaagatc
gtgtgtgacagcgagattgtctcaaagaaagcgcgggattttctcagcatcattcagccg
agactgaagcgccgcgtgatatactatgacggcaagacgccgttgttccacaagtatggg
atcgagcaggagataacgaacattcagtcgagccgtgtcgagctgaactgcggcggctcg
ctggttatcgagcagactgaggcgctggtcgctatagacgttaacagcgggcgataccgc
aagcatgagaacgccgaagcgaccgcacacaagaccaacatggaggcggcgaaggaaatt
gtacgccagctcaaattacgcgacctgggcggcttgatcgtgtgcgatttcatcgacatg
cgtgatcgcaagaacaagcggcaggtcgagcagatatttcgcgatgagctaaagagcgac
cgggcccggtcgaaggcactgcgtatgagtgcttttggtctgatcgaggtcacaaggcag
cggatgcggccctcattgcaatcgactacctacttgaaatgcccgcgatgcggaggcaag
ggaataatcaaaaacctggagtctcagtcgctcgaacttatgcggaccctcaaccttgcg
gttgcgcgtggtgatatcaagcgtatcgaaatgcttgtcgagcccgatgttgccagcttc
atgctcaacgaaaaccgtgccgcgatcactcagatcgagacgcaaagcgataagcagatc
cttattaaaggggatccaaatgtgctgggtgacgacttcaagatcgattgtttcaatgaa
cgcgggagcaaggtccagttcatgggctga
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