Algibacter luteus: O5O44_12570
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Entry
O5O44_12570 CDS
T09147
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alut
Algibacter luteus
Pathway
alut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O5O44_12570 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alut03021
]
O5O44_12570 (rpoC)
03400 DNA repair and recombination proteins [BR:
alut03400
]
O5O44_12570 (rpoC)
Enzymes [BR:
alut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O5O44_12570 (rpoC)
Transcription machinery [BR:
alut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O5O44_12570 (rpoC)
DNA repair and recombination proteins [BR:
alut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O5O44_12570 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WJJ96055
LinkDB
All DBs
Position
complement(2983205..2987506)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARKQDKNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGNAKNEEGEPLQKMDFLTEEEYLNILEELPQDNQY
LDDSDPNKFLAKMGAECLIELLARIDLEALSYELRHKANTETSKQRKTEALKRLQVVESL
RESNQNRENRPEWMIMKVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILECQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKLRKSTPEV
PVQGEGLTFYSPEEVEIAFNEKKVDLNAGIKVRTIDINENGKLDRMIVETTVGRVLFNQH
VPQAAGYINEVLTKKSLRDIIGRILKVTSVPETADFLDGIRTLGFKFAFQGGLSFSLGDI
IIPPEKQGMIDKANTLVDGITGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINSVDCGTLRGVEVEPLKKND
EVVETLEERIVGRVSLNDVHNPLTDELLVSSGQLIEDDIAKSIGDSPIESIEVRSALTCE
ALQGICAKCYGRNLATGKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LAVKFDGIAEIEDLKTVKGQDSDGKAIDIVISRTSELKLTDKKTGIVLSNNNIPYGSTIL
VKNGQELSKGDVVCTWDPYNGVIISEFAGKVKYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLHIEDSKGETVRSYNLPVGAHLMIDDGEKINIGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIVVESKLGEVKKYLVKLSNQILV
QENDYVKAGMPLSDGSITPDDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVKIIDSGDTIFLEDQLAHKDEFIKENDEIFGMKVIEDAGDSANLKAGQIISPRDL
RDENSILRREDKQLVVARDAKPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDTLEGLKENVIVGHRIPAGTGMRNYTDIIVGSKEEFDEMMQVKQELNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagataaaaatacagttaagagatttaataaaatctcaattggttta
gcatcaccagagtctattttagcagaatctagaggtgaagttttaaaaccagaaactatc
aattatcgaacgcacaaaccagaacgtgatggtttgttctgtgagcgtatttttggtcct
gtaaaggattatgagtgtgcttgtggtaaatataaaagaatacgttacaaaggtattgta
tgcgaccgttgtggtgtagaagttacagaaaagaaagtacgtcgtgatagagtaggacac
attaaccttgttgttcctgtagcacacatctggtacttccgttcgttaccaaataaaatt
ggttatttattaggattaccatctaagaaattagatatgattatttactacgaacgttac
gtagtaattcaaccaggtaatgctaagaatgaagaaggagaaccattacaaaaaatggat
ttcttaactgaagaagaatatttaaatattttagaagaacttcctcaagataaccaatat
ctagacgattcagaccctaacaagtttttagctaaaatgggtgctgaatgtttaattgag
ttattagcgagaattgatttagaagcgttatcatatgagttacgtcataaagcaaatact
gaaacgtctaaacaacgtaaaacagaagctttaaaacgtttacaagttgttgaatcatta
cgtgagtcaaatcaaaatagagaaaacagaccagagtggatgattatgaaggttattcct
atcattccgccagaattacgtccgttagtgcctttagatggtggtcgtttcgcaacttca
gatttaaatgatttatatcgtcgtgtaattatccgtaacaaccgtttaaagcgtttagta
gagataaaagctcctgaagtaattttacgtaacgaaaaacgtatgttacaagaatctgta
gattcattgtttgataacacacgtaaatcatctgcagtaaaaactgattctaacagaccg
ttaaaatcattatcagattcacttaaaggtaagcaagggcgtttccgtcaaaacttactt
ggtaagcgtgttgactattctgcacgttctgtaattgttgttggtccagaattaaaatta
tttgaatgtggattgccaaaaaatatggcagctgaactttacaagccttttgtaattaga
aaattaattgaaagaggtattgtaaaaacagtaaaatctgcaaagaaaattatagataaa
agagagcctgtggtttgggatatcttggaaaatgttcttaaaggacatccagtattacta
aaccgtgcgcctacattacaccgtttaggtattcaagctttccaaccaaaattaattgaa
gggaaagcgatacagttacacccattagtgtgtacagcatttaatgccgattttgatggt
gaccagatggcagtacatttaccattagggccagaagctatactagaatgtcaattatta
atgttggcttctcataacatcttaaatcctgcaaatggttcaccagtaacggttccttct
caagatatggtacttggtctttactatatgactaagttacgtaagtctactccagaagtt
cccgtgcaaggtgaaggattaactttttattctccagaagaagtagaaattgcttttaac
gagaagaaagtagatttaaatgccggaattaaagtacgtaccattgacattaatgaaaat
ggtaagttagacagaatgatagttgagacaactgttggtagagtattatttaaccaacat
gtacctcaagcggctggatatataaatgaagttcttactaagaaatctttaagagatatt
attggtagaattttaaaagtaacttctgttcctgaaacggcagatttcttagatggtatt
agaactttaggatttaagtttgcattccaaggtggtttatcatttagtttaggtgatatt
attattccgccagaaaaacaaggcatgattgataaagccaatacattagttgacggtatt
actggaaactataacatgggacttatcactaataacgagcgttacaaccaagttattgat
atatggacttcaacaaatgcagaattgactgaattgtcaatgaaacgtattcgtgaagac
caacaaggtttcaactcggtatttatgatgcttgattctggtgctcgtggatctaaagaa
cagattcgtcagcttacaggtatgcgtggattaatggcaaagcctaaaaaatcaaatgca
ggtggaggagaaattattgaaaacccaattctttctaactttaaagaaggactttcaatt
ttagaatactttatttctactcacggtgctcgtaaggggcttgcggatactgcacttaaa
actgcagatgctggttacttaacacgtcgtttagttgatgtgtctcaagatgttattatt
aatagcgttgattgtggtaccttaagaggtgtagaagttgaaccattaaaaaagaacgat
gaagttgttgaaactttagaagaaagaatcgttggtcgtgtatcattaaatgatgtgcat
aatccattaactgacgaattattagtttcttctgggcaattaatagaagatgatatcgcc
aagtctattggagattcgccaattgaaagtatcgaagttcgttctgcattaacttgtgaa
gctttacaaggtatttgtgctaaatgttatggtcgtaaccttgcaaccggtaaaatggta
caaagaggtgaagctgttggtgtagttgctgcacaatctattggagaacctggtacacag
cttacgcttcgtacattccacgtaggtggtatcgcaggtaacatttcagaagataacaag
ttagctgttaagtttgacggtattgctgaaatagaagatttaaaaacggttaaaggtcaa
gatagtgacggaaaagcaattgatattgtaatttcaagaacgtctgaacttaaacttaca
gataagaaaactggtattgttttaagtaataacaacattccttatggttcgacaattttg
gttaaaaacggtcaagaactgtcaaaaggagatgtggtttgtacttgggatccatataac
ggtgttattatttcagaatttgctggtaaagtaaaatatgaaaacatcgagcaaggtgta
acataccaagtagaaattgatgagcaaacaggtttccaagaaaaagtaatttctgaatct
agaaacaaaaagcttattccaactttacatatcgaagattctaaaggtgaaactgtacgt
tcgtacaacttaccagtaggagctcacttaatgattgatgatggcgaaaagattaacata
ggtaaaattttagtaaaaatacctcgtaaatctgctaaagctggtgatattacaggtggt
cttcctcgtgtaactgagttgtttgaagcacgtaacccatctaaccccgcagtagtaagt
gagattgatggtgttgtttctttcggaaaaattaaaagaggaaatcgtgaaatagttgta
gaatctaaattaggagaggttaaaaagtatcttgtaaaactatctaatcaaattcttgtt
caagaaaatgattatgtgaaagctggtatgcctttatctgacggatctattactccagat
gatatcttaaatattaaaggaccatcagctgttcagcaatacttagtaaacgaggtacaa
gaagtttatcgtttacagggtgtaaaaattaatgataagcactttgaagttgttgttaga
caaatgatgcgtaaagtgaagattattgattctggtgatactatcttcttagaagatcaa
ttagctcataaagatgaatttatcaaagaaaatgatgaaatcttcggaatgaaagttatt
gaagatgctggagattcggcaaatcttaaagcgggacaaattatttcgcctcgtgattta
agagatgagaattctatcttacgtagagaagataagcaacttgtagtagcaagagatgct
aagcctgcaacggctacacctattttacaaggtattacaagagcatcacttcaaaccaag
tcatttatttctgcggcatcgttccaggaaacaactaaagtacttaatgaagcggcagtt
gccggtaaagttgatacgttagaaggcttgaaagaaaatgtaattgttggacatagaatt
ccagcaggtacaggtatgagaaattataccgatatcattgtaggctctaaagaagagttt
gatgaaatgatgcaagtaaagcaagaattaaattataattaa
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