Allochromatium vinosum: Alvin_0561
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Entry
Alvin_0561 CDS
T01168
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alv
Allochromatium vinosum
Pathway
alv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alvin_0561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alv03019
]
Alvin_0561
03400 DNA repair and recombination proteins [BR:
alv03400
]
Alvin_0561
Enzymes [BR:
alv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Alvin_0561
Messenger RNA biogenesis [BR:
alv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Alvin_0561
DNA repair and recombination proteins [BR:
alv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Alvin_0561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
Helicase_C
HRDC
DNA_pol_A_exoN
BTRD1
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADC61511
UniProt:
D3RP01
LinkDB
All DBs
Position
646063..647925
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AA seq
620 aa
AA seq
DB search
MGESAREILSRIFGYDRFRGAQAEIIEHLIGGGDALVLMPTGGGKSLCYQIPALIRPGTA
IVVSPLIALMQDQVEALRQLGVRAAFLNSSLDLDEARAVERALRNGTLDLLYVAPERLLT
ERCLSLLDSIEIALFAIDEAHCVSQWGHDFRPEYIQLEQLHARWPQVPRIALTATADAPT
RNEIVARLRLESARRFVSSFDRPNIRYRIVEKTNPRRQLLDFLRREHPESAGIVYCLSRR
RVEETAVYLESEGFRALPYHAGLPSEMRREHQARFLREDGLIMVATIAFGMGIDKPDVRF
VAHLDLPKSLESYYQETGRAGRDGLPADAWMAYGLSDLVTLRRLIEESEAEERFKRIELH
KLDAMLGLCETTNCRRQVLLNYFGEPLEQPCGNCDTCLEPVETWDGTEAARKALSCIYRT
GQRFGSAYLADVLLGKSNERIRRFGHDRVSTFGIGQSVDGRPMTADQWRSVYRQLVAAGL
VSVDVEGHGSLRLTEASRPLLRGECGIQLRRDPERKRTGDRTRAPRAAAPSDPEAADLWQ
ALRAHRFALAQEQDVPAYIIFNDATLRAMLEQRPRTLIEMGRLPGVGETKLARFGEGFLR
VIAEHAARQGGPSASQATGE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaatcagcgcgtgagatcctgagccgtatcttcggctacgaccgctttcgcggc
gcccaggccgagatcatcgagcacctgatcggcggcggcgacgccctggtgctgatgccc
accggcggcggcaagtcgctctgctatcagatcccggccctgatccggcccggaaccgcg
atcgtggtctcgcccctgattgcgctcatgcaggatcaggtcgaggcgctgcgccagctc
ggcgtgcgcgcggccttcctcaattcctcgctcgatctcgacgaggcgcgcgccgtcgag
cgcgcactgcgcaacgggacgctggatctgctctatgtcgcccccgagcgcctgctgacc
gagcgctgtctgtccctgctggattcgatcgagatcgcgctcttcgccatcgacgaggcg
cactgtgtctcgcagtggggccacgatttccggcccgaatacatccagctcgaacaattg
cacgcgcgctggccccaggtgccgcgcatcgcgctcaccgccaccgccgacgccccgacc
cgcaacgagatcgtcgcccggctgcggctggagtcggcacgccggttcgtctccagcttc
gatcggcccaacatccgctatcgcatcgtcgagaagaccaacccgcgccggcaactgctc
gacttcctgcgtcgcgaacacccggagagcgccggcatcgtctactgtctctcgcgccgc
cgggtcgaggagacagcggtctatctcgaatccgaagggttcagagcgttgccctatcac
gccggtctgccgtccgagatgcgccgcgagcaccaggcccgcttcctgcgcgaggacggg
ttgatcatggtcgccaccatcgccttcggcatgggcatcgacaagccggacgtgcgcttc
gtcgcccatctggatctgcccaagagtctggagtcctactatcaggagaccgggcgcgcc
ggacgtgacggtctgccggccgatgcctggatggcctatggcctgagcgatctggtgaca
ttgcgccgtctgatcgaggaatccgaggccgaggagcgcttcaagcgcatcgagctgcac
aagctcgacgccatgctcgggctgtgcgagacgaccaactgtcggcgccaggtgctgctg
aactatttcggcgagccgctggaacaaccctgcggcaactgcgacacctgtctggagccg
gtcgagacctgggacggcaccgaggcggcgcgcaaggcgctgtcctgtatctatcgcacc
ggacagcgcttcggtagcgcctatctggccgacgtgctgctcggtaagtccaatgaacgc
attcgccgcttcggccacgaccgggtcagcaccttcggcatcggccagagcgtcgacggg
cgtccgatgacggccgatcagtggcgctctgtctatcgtcagctggtggccgccgggctg
gtctcggtggacgtcgaggggcatggctcgctgcggctgaccgaggccagtcgcccgctg
ttgcgcggcgagtgcggaatccaactgaggcgcgatccggaacgcaagcgtaccggcgat
cgaacacgggcgccccgtgccgccgcgccgagcgatcccgaggccgccgatctctggcag
gctctgcgcgcacaccgcttcgcgctggctcaggagcaggacgtgccggcctatatcatc
ttcaacgatgcgacgctgcgcgcgatgctggaacagcgaccacgcacgctgatcgagatg
gggcgtctgcccggcgtcggcgagaccaagctggcgcggttcggggagggctttctgcgt
gtgatcgccgaacatgcggctcgtcagggcgggccgtcggcgtcgcaagcgacgggggag
tga
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