Allochromatium vinosum: Alvin_0606
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Entry
Alvin_0606 CDS
T01168
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
alv
Allochromatium vinosum
Pathway
alv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alvin_0606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alv03019
]
Alvin_0606
Enzymes [BR:
alv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Alvin_0606
Messenger RNA biogenesis [BR:
alv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Alvin_0606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADC61556
UniProt:
D3RPH4
LinkDB
All DBs
Position
703394..705445
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AA seq
683 aa
AA seq
DB search
MTDTHLTSTRFDSLALDPRILAGLAEAGFTQCTPIQAETLPIALQGHDIAGQAQTGTGKT
AAFLVALMQRLLHEPPEAMPESAAAPETPVSADGSPETESLDPANALEAESEPESAPAPA
RRRRGPRALVLAPTRELAVQIHKDTLALAKHTGLRSTVVYGGTGYQQQRDELAAGVDILI
GTPGRLIDYYKQHVFDLKRIEVVVLDEADRMFDLGFIKDIRYLFRQMPPVEQRLGMLFSA
TLSYRVTELAYEHMNHPRLVKIETEQVTADRVRQVCYMTANEEKIPLLLGLIRGWPDGRI
IVFVNTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAARG
LHIPDVTHVVNYDLPEDPEDYVHRIGRTARAGAAGDAVSFVCETYAFCLLDIEQYIGIKV
PVEPVDPALLAEVDPRSRIRPDRADREERRDGRDKRGGRERGEGRGVQGRSSERDGASGR
DRRPGRERPAPRSEMSASAIEVSATVETPASSPARETVAAMQETPAVPAVQSEPVARPRQ
ERPDTSPPTRFKTLDESFLDQLVDEWPERTGPELEIPDMPIIRRIKRARGQLEPAALTSP
PVKPREPAEKAPAKARSAEAPRPVSAGPNAEPVVAASAPKTDSETAEARSAKRRRRRRKP
TGEGRGVQAETETVSDQAPETVD
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacacatctgacctcgacccgcttcgacagtctcgcgctcgatccccggatc
cttgccggtctcgccgaggccggcttcacccaatgcacgcccatccaggccgagaccctg
ccgatcgccctccagggccatgacatcgccggacaggcccagaccggcaccggcaagaca
gcggccttcctggtggcgctgatgcagcgtctgctgcatgagccgcctgaagccatgcct
gaatcggcggcggcgcctgagacgcccgtctcggcggacggctcgccggaaaccgaatcg
ctcgatccggcgaacgcgctggaagccgagtccgaacctgagtccgcgcccgcgcccgcc
cggcgtcgccgtggcccacgggcgctggtgctggcgccgacgcgcgagttggcggtgcag
atccacaaggacacgctggcgctggccaagcatacgggcttgcgttcgaccgtggtctat
ggcggcaccggctatcagcagcagcgcgacgagctggccgccggggtcgacatcctgatc
ggtacgcccggacgcctgatcgactactacaagcagcatgtcttcgacctcaagcgcatc
gaggtggtggtgctcgacgaggccgatcgcatgttcgatctcggtttcatcaaggacatc
cgctatctgttccgccagatgccgccggtcgaacagcggctggggatgctgttctcggcg
acgctctcctatcgggtcacggagctggcctatgagcacatgaaccatccgcgtctggtc
aagatcgagaccgagcaggtgacggccgaccgggtgcgtcaggtctgctacatgacggct
aacgaagagaagatcccgttgctgctggggctgatccgcggctggccggacgggcgcatc
atcgtcttcgtcaacaccaagcgcgaggccgatcgcgtctggggctatctccagggcaac
ggcatcgacactgccgtgctctcgggcgatgtgccccagcccaagcggttgaagctgttg
cgcgacttcaccaacggcaccttgccggtgctggtcggcaccgatgtggccgcgcgcggt
ctgcacatcccggatgtgacccatgtggtcaactacgacctgcccgaagaccccgaggac
tatgtgcaccgcatcggacgcacggcgcgcgccggggcggcgggggacgcggtcagcttc
gtctgcgagacctatgccttctgtctgctcgacatcgagcagtacatcgggatcaaggtg
ccggtcgagccggtcgatccggcgctgctcgccgaggtcgatccgcgcagccgcatccgg
ccggatcgcgccgatcgtgaggaacggcgcgatggacgcgacaagcgtggcggacgcgag
cgcggtgaggggcgtggtgtgcaaggtcgctcgtcggagcgcgacggggcgagcgggcgt
gatcggcggccggggcgtgagcgtccggcgccgcgctcagagatgtcggccagtgcgatc
gaagtatccgccacggtcgagaccccggcttcgagtccggcgcgcgagaccgtcgcggcc
atgcaggagacgcccgctgttccggccgtccagtccgagccggtcgcgcgcccgcgtcag
gagcgtccggacaccagcccgccgacccgcttcaagacgctcgacgagagcttcctcgac
cagctcgtcgacgagtggccggagcgcaccgggccggagctggagatcccggacatgccg
atcatccgccggatcaagcgtgcgcgcggtcaactcgaaccggcggccctgaccagtccg
ccggtcaagccgcgcgagccggccgagaaggcgccggccaaggccagatccgccgaggcg
ccgcgtccggtcagcgcaggtccgaacgccgaaccggtcgtggcggcctcagcgcccaag
accgactcggaaaccgccgaagcccgatccgccaagcggcgtcggcggcggcgcaaaccg
accggggaagggcgtggcgtccaggctgaaacggagacggtttcggatcaagcgcccgag
accgtggactga
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