Allochromatium vinosum: Alvin_0726
Help
Entry
Alvin_0726 CDS
T01168
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alv
Allochromatium vinosum
Pathway
alv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alvin_0726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alv03019
]
Alvin_0726
03009 Ribosome biogenesis [BR:
alv03009
]
Alvin_0726
Enzymes [BR:
alv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Alvin_0726
Messenger RNA biogenesis [BR:
alv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Alvin_0726
Ribosome biogenesis [BR:
alv03009
]
Prokaryotic type
rRNA processing factors
Alvin_0726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KCNQ_channel
Motif
Other DBs
NCBI-ProteinID:
ADC61675
UniProt:
D3RQ70
LinkDB
All DBs
Position
complement(847915..850920)
Genome browser
AA seq
1001 aa
AA seq
DB search
MKRMLINATQPEELRVATVDGQLLYNLDIESPGREQKKANIYKGVITRVEPSLEAAFVDY
GAERHGFLPLKEIARSYFEPDSVKPGSRVSIKESVREGREVVVQIDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGVSRRIEGQDRTELRDAMSQLQLPEDMGMIVRTAGVGKNVEE
LQWDLDYLLQLWQAIVSSGESRKAPFLIYQESDVIIRSIRDYLRVDIGEIVIDDRTVYER
AENFIRQVMPQNLKKLRLYQDEVPLFTRYQIETQIESAFQREVRLPSGGSIVIDHTEALT
SIDINSARATKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMGPPKNQRAVE
DRLREALKQDRARVQVARISRFGLLEMSRQRLRPSLGESSQQICPRCKGQGTIRGVESLA
LSILRILEEEAMKESTQRLQAQLPVSVATFLLNEKRRAILDIEQRQEVEILLIPNEHIQT
PEYRIERIRAQDIAGKAPEETPSYTIKAVPEPSAAAPHYAKLGQPARIEEPAVKLIAPSV
PAPRQTERPRPTPPTTVSRKETERAESESLLKRIWTGLFLSRSNEAGSAQPQAADKRAVA
GGRSGSKAGSEPSAASRPQERATNATGTASSGDESGRSRQARDERRRGQSQPTSDRRQPR
DDAGAGDETSGDENGREDRRRNNSARGRGRRGSNPNGAATRPDESRGSNANAQARQERTA
ETNAAARESADAAGDPTAMPKRRDARNDERPARPAPESNGTRERRPIDTTEIDAENVQLD
EETDSETTVSGTERPRSSRRRRGGRNRRRPATPRTDENWQESDSRTDSAAERSIKPEVTE
PRVERQDSPHETSSRRPGSERSNTPESVAAAPVSTTTATTDAAPTPSPSVTPGTAPAPAS
SAPASAESAPATPAPVQALAERPPLSPPAPMTAIAPVTPPEPKPAPVAASAPATPAEPRP
APVAEATASTAPSEPRPRTTDTVSEPASERRTESDRTGQDA
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgctcatcaacgcgactcagccggaagagttgcgcgtagcgactgtcgac
gggcagttgctctataacctcgatatcgaatcaccgggacgcgaacagaagaaagccaat
atctacaagggtgtcatcacccgcgtcgagccgagtctggaagccgccttcgtcgactat
ggcgccgagcgccacggcttcctgccgctgaaagagatcgcacggtcctatttcgagccg
gacagcgtcaaacccggctcgcgcgtcagcatcaaggagtcggtccgggaaggccgcgag
gtcgtggtccagatcgacaaggaggagcgcggcaacaagggcgcggcgctgaccaccttc
atctcgctggccggacgctatctggtcctgatgcccaacaacccgcgcgccggcggcgtg
tcgcgacgcatcgagggtcaggaccgcaccgaactgcgcgacgccatgagccagctccag
ctccccgaggacatggggatgatcgtgcgcaccgccggcgtcggcaagaacgtcgaggaa
ctgcaatgggatctggactatctgctccagctctggcaggcgatcgtcagctcgggtgag
agccgcaaggcgccgttcctgatctatcaggagagcgacgtcatcatccgctcgatccgt
gactatctgcgcgtcgacatcggcgagatcgtgatcgacgaccgcaccgtctatgagcgc
gccgagaacttcatccgccaggtgatgccgcagaatctcaagaagctacggctctaccag
gacgaggtgccgctgttcacgcgctaccagatcgagacccagatcgagtcggccttccag
cgcgaggtgcgcctgccctcgggcggctcgatcgtcatcgaccacactgaggccctgacc
tcgatcgacatcaactcggcgcgcgccaccaagggcgccgacatcgaggagaccgcgctc
aacaccaacctggaggccgccgacgagatcgcgcgccagttgcgtctgcgcgacctcggc
ggactgttcgtcatcgacttcatcgacatggggccgccgaagaatcagcgcgcggtcgag
gaccggctgcgcgaggcgctcaagcaggatcgcgcgcgggtgcaggtggcgcgcatctcg
cgcttcggattgctggagatgtcgcgccagcgtctgcgtccctcgctcggcgagtcgagc
cagcagatctgtccgcgctgcaagggccagggcaccattcgcggtgtcgaatcgctcgcg
ctctcgatcctgcgcatcctggaagaggaggcgatgaaggagagcactcagcgtctccag
gctcagctgccggtgagtgtggcgaccttcctgctcaacgagaagcgccgcgccattctc
gacatcgagcagcgtcaggaagtcgagatcctgctcatccccaatgagcacatccagacg
cccgagtacaggatcgaacgcatccgcgctcaggacatcgccggcaaggcgccggaggaa
acgccgagctacaccatcaaggccgttcccgagccgagcgccgccgcgccgcattacgcc
aagctcggtcagccggcccggatcgaggaacccgccgtcaagctcatcgccccgagtgtg
cccgcgccgcgtcagaccgaacgcccgcgcccgactccgccgaccacggtcagccgcaag
gagaccgagcgcgccgagtccgagagtctgctcaagcgcatctggaccggactcttcctc
tcgcgctcgaacgaggcaggcagcgcccagccacaggccgccgacaagcgcgccgtggcc
ggcgggcgctccggttccaaggccggttccgagccgtcggcggcatccaggccgcaggaa
cgcgcgacgaacgctaccggcacggccagttccggcgatgagtcggggcgttcacgtcag
gcgcgcgacgagcgtcggcgtggtcagtcgcagccgacgagtgaccggcgccagccgcgc
gacgacgcgggcgcgggcgacgagaccagtggcgacgagaacgggcgcgaggatcgacgc
cgcaacaacagtgcgcgcggacgcggtcggcgcggctcgaatccgaacggcgctgcaacg
cgccccgatgagtcgcgcggttccaatgccaatgctcaggcgcgtcaggagcggaccgcc
gaaacgaacgcggcggcgcgcgagtcggccgacgcggccggcgacccgaccgcgatgccc
aagcggcgcgacgcccggaacgacgagcgtccggcacggcccgcacccgagtcgaacggt
acgcgcgagcgccgtcccatcgacacgaccgagatcgatgccgagaacgtccaactcgac
gaagagaccgatagcgagacgaccgtctccggtaccgagcgtccacgttcatcgcgtcga
cgtcgcggcgggcgcaaccgacgccgccccgcgacgccgcgcacggacgagaactggcag
gagagcgacagccgcacggactcggcggccgaacgctcgatcaaacctgaagtgacggaa
ccgcgtgtcgagcgtcaggacagcccacacgagacctccagccgtcgccccggctccgag
cggtcgaacactccggagtcagtcgctgcggctccagtgtcgacgacgaccgcgacgact
gacgctgcaccgacgccgtcgcccagcgtcacgcctggaacggcgcccgctccagcgtct
tcggcaccggcatcggccgagtcagccccggccacgccagcgccggtccaggctctggct
gagcgtccgccgctttcgccgccggcgcccatgaccgcgattgctcccgtgacaccgccc
gaacccaagcccgcacccgtggcggcatcggctccagcgacaccggccgagcccaggccc
gcgcccgtggccgaagcgactgcatcgacggctcccagcgaaccacggccgcgaaccacc
gatacggtctccgagcctgcatcggagcgccgcaccgaatcggaccgaaccggccaggac
gcctga
DBGET
integrated database retrieval system
