Allochromatium vinosum: Alvin_1285
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Entry
Alvin_1285 CDS
T01168
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
alv
Allochromatium vinosum
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alv03016
]
Alvin_1285
Enzymes [BR:
alv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Alvin_1285
Transfer RNA biogenesis [BR:
alv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Alvin_1285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADC62224
UniProt:
D3RSR5
LinkDB
All DBs
Position
1473431..1475257
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AA seq
608 aa
AA seq
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MPTHQVTPPLDSLVLYKSRPARVAALGEKIEIELEGGQTKRVRPKDIELLHPGPLRRLSE
LVPLEGELNAAWELLEGGETTVRELAELAFDDYTPASAWAVWQQVAEGLAFVGTPESIQV
RPRAVVEREQAERTAKEAAERDWRAFLERMAAARPAPEDAPRLSEVERLALGQSEHSRIL
EALGHPQTPESAHRALVQVGHWPERHNPHPRRCGAPIGDIELPVPDLDEETRLDLTHLPA
YAIDDEGNQDPDDALSLDGDRLWVHVADVGALVRPDSELEREARARGSNLYLPEGVVNML
PWRVTEHLGLGLQEVSPALSFALRCDADGELRDIEVHRTWVRVTRLSYEAVEQRLSEEPF
AALRAFTDRFRARRFAQGASRLALPEVSVRVEDGRVNIRPLPRLMSRELVTDAMLMAGEA
AARFCLEREIPIPFAVQPPPESTDESTDLASMYARRRGFKPTRLVLEPDRHASLGLGHYT
RATSPLRRYSDLLVHQQIRAWLDGAPPLDRAQVLERIGEAEQSSIAVRRGERLSNQHWKL
VYLKENPGWKGQGVVVALEERRAVILVPDLALEARIRVRDAVTLNQPLRIAVNEVDLPDL
SASFRALG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
ttgccgacacatcaagtgacaccccctctcgatagcctggtgctctacaagagccggccg
gcgcgcgtggccgcgctcggcgagaagatcgagatcgagctggagggcggtcagaccaag
cgcgtccggcccaaggacatcgaactgctgcatcccggaccactgcgccggttgtccgaa
ctggtgccgctggagggcgaactgaacgcggcctgggaattgctggaaggcggcgagacc
acggtgcgcgagctggccgaactggccttcgacgactacacaccggcgagcgcctgggcc
gtctggcagcaggtcgccgaagggctggcttttgtcggcacgcccgagtcgatccaggtc
cgaccgcgcgcggtggtcgagcgcgagcaggccgagcgtaccgccaaggaggccgccgaa
cgcgactggcgcgccttcctggagcgcatggccgccgcgcgtccggcgcccgaggatgcg
ccccggctcagcgaggtcgagcgtctggcgctcggccagtccgagcacagccgcatcctg
gaagcgctcggccatccgcagactccggagagcgcccatcgtgccctggtccaggtcgga
cattggcccgagcgtcacaatccgcatccgcgccgctgcggcgccccgatcggcgacatc
gaactgccggtcccggatctcgacgaagagacgcggctcgatctcacccatctgccggcc
tatgccatcgacgacgagggcaatcaagaccccgacgatgccttgagcctggacggcgac
cgcctctgggtccatgtcgccgacgttggcgctctggtgcgtccggacagcgagctggaa
cgcgaggcgcgcgcgcgcggctcgaacctctatctgcccgagggcgtggtcaacatgctc
ccctggcgcgtgaccgaacatctgggtctgggattgcaggaggtctcgcccgcgctctcg
ttcgccctgcgctgcgacgcggacggcgaactccgcgacatcgaggtccaccgcacctgg
gtgcgcgtcacccgtctgagctatgaggccgtcgagcagcggctgagcgaggaacccttc
gccgccctgcgcgccttcaccgaccgcttccgcgcccggcgctttgcgcagggcgccagc
cgtctggccctgcctgaagtcagcgtgcgggtcgaggacggtcgggtcaacatccgtccg
ctgccgcggctgatgagccgcgagctggtcacggatgccatgctgatggccggcgaggcc
gccgcgcgcttctgtctggagcgcgagatcccgatccccttcgctgtccagccgccgccc
gaatcgacagatgagagcacggacctggccagcatgtatgcccgtcggcgcggcttcaag
ccgacccggctggtgctggagccggaccggcacgccagcctgggtctggggcactacacc
cgcgcgaccagtccgctacggcgctattccgatctgctggtgcatcagcagatccgtgcc
tggctcgacggcgctccgccgctcgatcgcgctcaggtgctggagcgcatcggcgaggcc
gagcaatcgtcgatcgcggtgcgacgcggcgaacgactctccaaccagcactggaagctg
gtctatctcaaggagaatccgggttggaaggggcagggcgtggtggtggcgctcgaagaa
cgccgggccgtgatcctggtgccggatctggcgctggaagcgcgcattcgggtgcgcgat
gccgtgacgctcaaccagccgctccggatcgccgtcaacgaggtcgatctgccggatctc
agcgccagtttccgtgcgctcggctga
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