Allochromatium vinosum: Alvin_2767
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Entry
Alvin_2767 CDS
T01168
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alv
Allochromatium vinosum
Pathway
alv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alvin_2767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alv03019
]
Alvin_2767
Enzymes [BR:
alv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Alvin_2767
Messenger RNA biogenesis [BR:
alv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Alvin_2767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_30
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
ADC63676
UniProt:
D3RQ65
LinkDB
All DBs
Position
3127120..3128436
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AA seq
438 aa
AA seq
DB search
MSFSALGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPML
HLLSQSTQRQRAPRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALR
RGVDILVATPGRLLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQN
LLFSATYSREIEQLAIGLLHDPLRIEVAPRNTAAETVTQVVHPVAREAKRSLLSHLILQG
DWQQVLIFTRTKHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALVATD
IAARGLDIDRLPHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLISPDERGLLAGIERL
LGRRIDVQRIDGFEERGSTDETLQADARRQSQAPRKHHARPRSDGRGEQSGNRAQTQHPR
SHARKSGRGGSSRPRATV
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgcgctcggcctctcggccgaactgctgcgtgcgatcgccgcgcagggc
tacactcagcccacgccgatccaatccaaagccattcccgccgttctggcccgccgcgac
gtactcgccgccgcccagaccggcaccggcaagaccgctgccttcaccctgccgatgctg
catctgctgagtcagtccacccagcgtcagcgtgctccgcgcgccctggtcctgactcca
acccgcgaactcgcggcccaggtcggcgaaagcgtcagcacctatggtcagcatctgccg
ttgcgcgcactccagatcttcggcggcgtcggcatggtgccccagaccacggcgctgcgt
cgcggcgtcgacatcctggtcgccacgccgggccggctgctcgaccacgtcggccagggc
catgtcgacctgtccaagatcgaattcttcgtcctggacgaagccgaccgcatgctcgac
atgggcttcatccacgacatccgccgcgtgctcaagctgctgccgtccaagcgccagaat
ctgctgttctcggccacctattcacgcgagatcgagcaactggccatcggcctgctgcac
gacccgctgcgcatcgaagtcgctccgcgcaacaccgccgccgagaccgtgacccaggtg
gtccatccggtggcgcgcgaagccaagcgctcgctcctttcgcatctgatccttcagggc
gactggcaacaggtgctgatcttcacccgcaccaagcacggcgccaaccggctggccgaa
cagctcggacgcgacggcatcaccgccgccgccatccacggcaacaagagccagggtgcc
cgcacccgcgcgctcgctgatttcaagagcggcgccctgcgcgccctggtcgcgaccgac
atcgcggcgcgcggactcgatatcgaccgcctgccgcatgtggtcaacttcgagttgccg
aacgtacccgaagactatgtacaccgtatcggccgcaccggacgcgccggctcggacggc
accgccgtgtcgctgatcagccccgacgaacgcggactgctggccggtatcgagcgtctg
ctcggacggcgcatcgacgtccagcgcatcgacggcttcgaagagcgcggctcgaccgac
gagacgctccaggccgatgcccggcgtcagtcgcaggcgccgcgcaagcatcacgcccgc
ccacgttccgacggacgcggcgagcagagcggcaatcgcgcccagacccagcatccgcgc
agtcacgcccgcaagagcggacgcggcggcagctcgcgcccacgcgcgacggtttga
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