Allochromatium vinosum: Alvin_3046
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Entry
Alvin_3046 CDS
T01168
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alv
Allochromatium vinosum
Pathway
alv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alvin_3046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alv03019
]
Alvin_3046
03009 Ribosome biogenesis [BR:
alv03009
]
Alvin_3046
Enzymes [BR:
alv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Alvin_3046
Messenger RNA biogenesis [BR:
alv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Alvin_3046
Ribosome biogenesis [BR:
alv03009
]
Prokaryotic type
rRNA helicases
Alvin_3046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ADC63946
UniProt:
D3RS09
LinkDB
All DBs
Position
complement(3427471..3429459)
Genome browser
AA seq
662 aa
AA seq
DB search
MDTPDETSVGFDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKT
AAFALPMLSRLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGL
QLSQLKRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQA
PAERQVALFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLT
RIMELEPFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLD
VLVATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLL
KSIERVIRRPIPSMEPPSAAALSESRIDRFIGEIRKAQSEQDLDFFYRLLARISQEQEIE
MLDIAAALAYLNQRERPLNVKEDPPRPPKRFDERGERGRGRDGDRRQGGWEDRPPRRERF
DERDGNRDERRPRFDRAERSERPERPERGQPRRDDADLTSYRIEVGHQHGVSPREIVGAI
ANESGLEGRYIGRIDIRDDHSVVDLPKGMPNEVFQHLKRVYVRGQALRITPADESAGAGQ
GGAWEGRRDRSGPPRERDSRPPRAGGDFQRRDRDGYAPRRPSSGKSNDGGKRGPGSGRKF
RD
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggataccccagacgaaacgagcgtcggcttcgacgcgctcggtctttcacccgtgatc
gcgcaagcggtcaagaacctcggctacgaatcccccacggcgatccagagccagtgtatc
ccgcatctgctcgccggtcgcgacctgctcggtcaggcccagaccggcaccgggaagact
gccgccttcgccctgccgatgctcagccgtctcgatccggatctgcgcaagccgcaggtg
ctggtgctcacgcccacgcgcgaactggcgctccaggtcgccgaagccttccagcgttat
gctacggatctcaagggctttaacgtgctgcccatctatggtggccagggctacgggctg
caactctcgcaactcaagcgcaatccacaggtgatcgtcggaactccagggcgggtcatg
gaccacatccgtcgcggcaccctggcgctggactcgatccgcgccctggtgctggacgag
gccgacgagatgctcaacatgggctttgccgaggacatcgactggatcttcgatcaggct
ccggccgagcgtcaggtcgcgctgttctcggccaccatgccgccggccatccggcgcgtg
gctcagacgcgactggtcgatccggtcgaggtcaagatcgccgccaattccgagacggtc
gataccatcgagcagcatcactgcatcgtcacccgcttccacaagctcgatgtgctcacc
cgcatcatggaactggagccgttcgacgggctgctgatcttcgtgcgcaccaagaacgct
acgactgaactggccgacaagctcaaggcacatggtttcgccgccgagccgctcaatggc
gacatgaaccaggagatgcgcgagcgcaccgtcgagcggctcaagcaggggcagctcgat
gtgctggtcgccaccgatgtcgccgcgcgcggtctggatgtcgagcgcatcagccatgtg
gtcaactacgacatcccgaccgatccctcggcctatgtgcatcgcatcggtcgcaccgga
cgtgccgggcgtgccggacgggcgatcctgctggtcgagccgcgcgagcgcgggctgctc
aagtcgatcgagcgcgtcatccggcgtccgattccgtcgatggagccgccctcggccgcc
gcactcagcgagtcgcgcatcgaccgcttcatcggcgagatccgcaaggcccagtccgaa
caggatctggatttcttctatcgcctgctcgcgcgcatcagtcaggagcaggagatcgag
atgctggacatcgccgccgcgctggcctatctcaatcagcgcgagcggccgttgaacgtc
aaggaggatccgccgcgcccgcccaagcgcttcgacgaacgcggcgagcgcggacgtggt
cgcgatggcgatcgacgtcagggcggctgggaggatcgtccgccgcgccgcgagcgcttc
gacgagcgcgatgggaatcgcgacgaacgccggccgcgtttcgatcgggccgaacgctcg
gagcgtccggagcgtcccgaacgcggccagccgcgccgcgatgacgccgatctgaccagc
taccgcatcgaagtcggtcatcagcacggcgtgagtccgcgcgagatcgtcggcgccatc
gccaacgaatccggcctggaggggcgttatatcggccgcatcgacatccgcgacgatcat
tcggtcgtcgacctgcccaaggggatgccgaacgaggtcttccagcatctcaagcgcgtc
tatgtgcgcggtcaggcgctgcggatcacgcccgccgatgagagcgcgggggcagggcag
ggcggggcctgggaaggtcgccgtgaccgctcgggtccgccgcgcgagcgtgattccagg
ccaccgcgcgccggaggcgacttccagcgccgtgaccgcgacggctatgcaccgcgccgg
ccgagctcgggcaagagcaacgatggcggcaagcgcggtccgggatcgggacgtaaattc
cgcgactga
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