Allochromatium vinosum: Alvin_3113
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Entry
Alvin_3113 CDS
T01168
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alv
Allochromatium vinosum
Pathway
alv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Alvin_3113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alv03400
]
Alvin_3113
Enzymes [BR:
alv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Alvin_3113
DNA repair and recombination proteins [BR:
alv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Alvin_3113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_C
PriA_3primeBD
DEAD
Helicase_C
ResIII
Zn_ribbon_PriA
PriA-like_WH
HTH_20
HTH_IclR
AAA_30
DUF3489
AAA_19
TrwB_AAD_bind
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ADC64012
UniProt:
D3RS75
LinkDB
All DBs
Position
3510393..3512594
Genome browser
AA seq
733 aa
AA seq
DB search
MRIAVEAPLADTFDYLPPIDPPLARLRPGMRLLVPFGRGSRVGILMAVVDRSTHPVDKLR
RVERVLDPEPLLDEPDLKLLAWAAAYYQQPIGEALFAAIPARLRDPEPLPLETTPGLQAT
ASGRALDLETLARAPKQRALLDALRSEPEGLTLGELATRFGDNQSAIRALRSKGLITDIQ
LARAADSVAETPSLVGPELHAEQAAAVAAVQAAFGAFGAFLLDGVTGSGKTEVYIRLIES
VIAQGRQALVVVPEIGLTPQLRERFRTRLPGPIAVLHSALKASERERNWLRAARGEANLI
LGTRSAVLAPIPRLGLIVVDEEHDDSLKQQDGLRYSGRDLAVRRAQLAGCPVVLGSATPS
LETLRNAQLGRYRWLRLTERAGGARPPTISILDIRNQPLRAGLSPLLRDHMLAELTAGNQ
ILLFLNRRGYAPVLTCHACGWVGECPHCDARLTLHLSERRLWCHHCGWSCLQPGQCPKCR
SLELRMLGRGTERLEEELVELFPETRIARLDRDSTRRRGELGRVLDAVHSGETQILLGTQ
MLAKGHDFPGVTLVGILELDQSLYASDFRAAERTAQLIVQVAGRAGRAERPGRVVLQTRH
PEHPLLQSLLREGYSGFAEAALRERAEAELPPYSHLALARAEAPDPEDALAFLRQVRELG
ERLDGDSGAILLLGPIPAPMERRAGRHRAQLLIQCAERPRLQRFLTRWVNDVRTLPRRKG
LRWSLDVDPRDLL
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtatcgcagtcgaggcgccgctggccgacaccttcgactatctgccgccgatcgat
ccgccgctcgctcggctgcgtccggggatgcgcctgctggttccgttcgggcgcggctcc
cgggtcggaatcctgatggcggtcgtcgatcggagcacgcatccggtcgacaagctcagg
cgggtcgagcgcgtgctggaccccgagccgctgctcgacgagccggatctgaagctgctg
gcctgggcggcggcctactatcagcaaccgatcggcgaggcgctgtttgcggcgattccg
gcgcgtctgcgcgatcccgagccgctgccgctggagacgacgcccggactccaggcgacc
gcgtccggccgggcgctggatctggagacgctcgcgcgcgcccccaagcagcgcgcactc
ctcgatgcactgcgctccgaacccgaaggactgacgctcggcgagctggcgacacgattc
ggcgataatcagagcgcgatacgggcgctcagatccaaagggttgatcactgacattcag
ctcgcgcgtgcggccgattccgtcgccgagacgccgtcgctcgtcggccccgaactccat
gctgagcaggcggccgccgtcgcggcggtgcaagccgccttcggcgccttcggcgccttt
ctgctcgacggcgtgaccggcagcggcaagaccgaggtctacattcgcctgatcgagtcc
gtcatcgcccagggtcgacaggcgctggtggtggttcccgagatcggcctgacgccccag
ttgcgcgaacgcttccgcacccggctgcccggccccatcgccgtgctgcattcggcgctc
aaggccagcgagcgcgagcgcaactggctgcgcgcggcgcgcggcgaagccaatctcatc
ctcggcacgcgctcggccgtactggcgccgattccgcgtctgggactgatcgtggtcgac
gaggagcacgacgactcgctcaagcagcaggacggactgcgctactcaggacgcgatctg
gcggtgcgccgcgcccagctcgccggctgtccggtggtgctgggttcggccacgccctcg
ctggagaccctgcgcaacgctcagctcggacgctaccgctggctgcgtctgaccgagcgc
gccggcggggcacgaccgccgacgatctcgatcctcgacatccgcaatcagccattgcgc
gccggactctcgccgctactgcgcgaccacatgctggccgaactgacggcgggcaatcag
atcctgctctttctcaaccggcgcggctatgcgcccgtgctcacctgtcatgcctgcggc
tgggtcggcgagtgtccgcactgcgacgcgcgtctgaccctgcatctgagcgagcggcgg
ctgtggtgtcatcattgcggctggtcctgtctccagccgggccagtgtcccaagtgccgg
agcctggaactgcggatgctcggacgcggcaccgagcggctggaagaggaactggtcgaa
ctcttccccgagacgcggatcgcccggctcgatcgcgacagcacgcgccgccggggcgaa
ctcgggcgggtgctggacgccgttcacagcggcgagacccagatcctgctcggcacccag
atgttggccaagggacacgactttccgggcgtgaccctggtcggcatcctggaactcgac
cagtcgctctatgccagtgatttccgtgccgccgagcgcaccgctcaactcatcgtgcag
gtggccggacgcgccggacgcgccgagcgtccgggacgggtggtgctccagacccgtcat
cccgagcatccgttgctgcaatcgctgctgcgcgagggctattcgggcttcgcggaggcg
gcgctgcgcgagcgcgccgaggccgagctgccgccctacagtcatctggcgctcgcacgg
gccgaagcgcccgatcccgaggacgcgctggcctttctgcgtcaggtgcgcgaactcggc
gaacggctcgacggcgactcgggcgcgatcctgctgctgggaccgatcccggcgccgatg
gaacgccgcgccggacgccatcgcgcgcaactcctgatccagtgtgccgagcgtccgcgt
ctgcaacgcttcctcacccgctgggtgaacgacgtccgcaccctgcccagacgcaaaggg
ttgcgctggtcgctcgacgtcgatccgcgcgatctgctgtaa
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