Allochromatium vinosum: Alvin_3164
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Entry
Alvin_3164 CDS
T01168
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
alv
Allochromatium vinosum
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alv03016
]
Alvin_3164
Enzymes [BR:
alv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Alvin_3164
Transfer RNA biogenesis [BR:
alv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Alvin_3164
Prokaryotic type
tRNA splicing ligases
Alvin_3164
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DNA_ligase_IV
Motif
Other DBs
NCBI-ProteinID:
ADC64062
UniProt:
D3RW50
LinkDB
All DBs
Position
pALVIN01:31662..32858
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AA seq
398 aa
AA seq
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MTIKQVITDGDKPIKVWTDELDTLSREQLVNLSRLPFIHRHIAAMPDVHAGLGATIGSVI
ATDKAIIPAAVGVDIGCGMAAARTSLTVDQLDESALKRVFDQISRDVPVGRDQHRNDRAC
TQAAEPFADPLAALTDKHPQLRKAFKRFDNWVNQLGTLGSGNHFIEVCRDEDDRIWVMLH
SGSRGIGNAMGTYFIDLARREMQRWMIRLPDRDLAYFPEGTPYFDDYVAAVSWAQTYARV
NREQMMHLVLAALERHLPAFELTDAVIDCHHNYVEREHHFGANVWVTRKGAIRARNGELG
IVPGSMGARSYIVRGQGNPESFCSSAHGAGRRMSRTAAEKQFTPADLAAQTQGVICRKDK
GVLDEIPGAYKDIDQVMANQADLVEVVHTLKQLVCIKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcaagcaagtcatcaccgacggcgacaagccgatcaaggtttggaccgacgaa
ctggataccctctcgcgcgagcaattagtcaacctctccaggttgccgttcatccaccgt
catatcgccgccatgccggatgttcatgccggcctgggcgccaccatcggcagcgtgatc
gccaccgacaaggccatcatccctgcggctgtgggcgtggatattggctgcggcatggcg
gcggcgcgcacctcactgacagtcgatcagctcgatgaatcagcgctcaagcgcgtcttc
gatcagatcagccgcgacgtgccagtcggacgcgatcagcaccgcaacgaccgcgcctgc
acccaggccgccgaaccctttgccgaccctctggcggcgctgaccgacaagcatcctcaa
ctgcgcaaggcgttcaagcgcttcgacaactgggtcaaccagctcggcacgctcggcagc
ggcaatcacttcatcgaggtgtgccgtgatgaggacgaccggatctgggtcatgctgcac
tcgggcagtcgcggcatcggcaacgccatgggcacctatttcatcgatctggcgcgacgc
gagatgcagcgctggatgatccggctccccgaccgggatctggcctactttcccgagggc
acgccgtacttcgacgactatgtcgcggccgtgtcctgggcgcagacctatgcgcgcgtc
aatcgcgaacagatgatgcacctggtgctggccgcgctcgaacggcatctgccggccttc
gaactgaccgacgcggtcatcgactgccaccacaactatgtcgagcgcgagcatcacttc
ggggccaatgtctgggtgacgcgcaagggcgcgatccgggcgcgcaacggcgagctgggc
atcgtgccgggcagcatgggcgcgcgcagctatatcgtgcgcggccagggcaatcccgag
agcttctgttcaagcgcccacggcgccgggcggcgtatgagccgcacggccgctgagaag
cagttcacgccggcggatctggcggcccagacccagggcgtgatctgccgcaaggacaag
ggcgtgctcgacgagatccccggtgcctacaaggacatcgatcaggtcatggccaatcag
gccgatctggtcgaggtggtgcataccctcaagcagctggtctgcatcaaggggtga
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