Allochromatium vinosum: Alvin_3179
Help
Entry
Alvin_3179 CDS
T01168
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alv
Allochromatium vinosum
Pathway
alv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alvin_3179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alv03019
]
Alvin_3179
03400 DNA repair and recombination proteins [BR:
alv03400
]
Alvin_3179
Enzymes [BR:
alv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Alvin_3179
Messenger RNA biogenesis [BR:
alv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Alvin_3179
DNA repair and recombination proteins [BR:
alv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Alvin_3179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
ResIII
AAA_22
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADC64076
UniProt:
D3RW64
LinkDB
All DBs
Position
pALVIN01:complement(46193..51340)
Genome browser
AA seq
1715 aa
AA seq
DB search
MEPTAPSEPALLCLDIETDRHDRLKLREIGLYRPDTGARLKLSGQDRSLVAKVDALTDGA
TGLLGHNIIAFDQPALSVLHPDLALHRLPLIDTLELSPIAFPRNPYHKLVKDYRLCTTSR
NDPVRDAELAYQLFRDEYAALKARAAESPDELLCLHALMGGEENAGLARIFRAVRHSAPP
SLEETVTAWTRATADQVCLTAHRRLITDWLPDPAWRKPLAYTLAWLGVAGGNSVLPSWVR
HAFPKTGEAIAALRDRPCDDPACAWCREQHDLDRLLPLYFPGITRFRTKPATPDGRSLQR
AIVENGFGGRPTLAILPTGGGKSLCFQLPALARYERTGALTVVISPLQSLMKDQVDNLIA
RGLTCAGYLNGMLTPIERRAMLDRLRLGDLGLIFVAPEQFRSTAFAQALSHREIAAWIFD
EAHCLSKWGHDFRPDYLYVSKFIKATQKDRCSPVFGFTATAKPDVVDDIAAHFRERLGLE
LDRLEGGVSRDNLVYEVHAVPAQAKLGEVLRRLKEALREEGGAIIFCARQKTAQETAEFL
TQAGIDCAYFHGGLDSDIKRAVQEDFIAGRRRVIAATNAFGMGVDKPDVRLVIHLDTPGS
LENYIQEAGRAGRDQEPAQCVLLYDDADLDIQFNLLKRSRLSQNDIRAILKAIRAIERKD
RSEGEVVVTTGEILLETPESHRIEADDRQADTKVRIAIAWLEEARLLERQENHTRVFPGS
LRVTALDEAVAILRKRLGPQTEIAPYEAILRELIEAGDDESRSTDDLMLATGLDSRRLRA
MLRELDQWGLLANETEIGVTLYRDPATRDRLDELTRLETALIAQLREAAPDADQDEGWQI
LNVRRLCDTLRRETHTDLDPQRLTRLLKSFAEAFGDGDGDGQRAFLKLRPAGADNRYIKL
LRPWSSIELISERRRRFAQALVEYVYRVRQGNNLQVVFKQRDLEDSLKGDLTLQDLEIKD
WDRALSSALLYLDANEVLKLSRGKALFRSAMNITLNSEARRRQFSKGDYAELDLHYRDKI
VQVHVMGEYARLGAVKVQAAMQFIADYFRLERGEFIRRHFAGRKEILEIATSEAAHRRIL
VDLRNPAQQAIVAAPPEGSLLVLAGPGSGKTRVIVHRVAWLLRQGMAHPQDIMVLAYNRS
AVSEIRHRLWALVGPEAVGVSVQTVHGLAMRLTGTSYAVALERGEKIDFTTVLRQATARL
KQAEREDVSESTERDRLLAGLRFLLIDEYQDINGEHYDLISAVAGRALDSEEDRLSLMAV
GDDDQNIYAFGGADMRFIRQFETDYQARRHQLIENYRSTRHIIACSNRVIAPARDRMKTD
EAIRIDHARRERPAGGDLEERDPVTGGRVQVLDVSADPRLEAQIALAELQRLYAVEDTTP
EGRWGRFAVIARQWKDLEPLAALCRRRGVPVRLLRDDHQPDLHRTREGHGLLDLLRGEQR
RTAKRRVLVRARTLSRWFRRRYGLPVDGLIEHPFRAALAQFIAETESAAPEGRRVVEDLI
EALYEFGSGGRTMAESRANGPMVLMTAHRAKGLEFDHVLILDGGGWSSGDDERRLYYVAM
TRARRSLTLCERLDGRHPFVRATEGLALRTRPTVPELEPGLDHRIWVADPSMVYLDWPGR
FAPNAPIHRALAALEVGDPLELRPMNRRDGQPGWELGDRHGVVVARMAAKFQPPVGEIVT
VRVAAVLVRTAKGDEGLRCERWELVLAEIEYRDTN
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggagccgaccgcgccctccgaacccgctttgctctgcctcgatatcgaaaccgaccgc
cacgaccggctgaagctgcgcgagatcggcctgtaccgtcccgacacgggcgcgagactg
aagctttccggccaggatcggagtctggtcgccaaggtcgatgcgctgaccgacggggcg
accggcctgctcggtcacaacatcatcgccttcgatcaaccggcgctgtccgtgctccat
cccgatctggccctccatcgcctgccgctgatcgacaccctcgaactctcgccgatcgcc
ttcccgcgcaatccctatcacaagctggtcaaggactatcggctctgcaccacttcgcgc
aatgatccggtgcgcgatgcggaactggcctatcaactcttccgcgatgagtatgcggcg
ctgaaggcgcgggcggctgaatcccccgacgagctgctgtgtctgcacgcgctcatgggc
ggcgaggaaaacgccggtctggcccggatcttccgcgccgtgcgccacagcgcgccgcca
tcgctggaggaaactgtgaccgcctggacacgggcgacagcggaccaggtctgtctcacg
gcgcatcgccggcttattacagactggctcccggatcccgcgtggcgcaagccgctggcc
tatacgctggcgtggctcggcgtggcgggcggaaactcagtcctgccgtcctgggtgcgg
cacgcctttcccaaaaccggtgaggccatcgccgccttacgcgatcggccctgtgacgat
cccgcgtgcgcctggtgccgcgaacagcatgatctcgaccggctgttgcccctctacttc
cccggcatcacccgctttcgcaccaagcccgcgacgcctgacggacgctcgctgcaacgg
gccatcgtcgagaacggcttcggcggacgacccacactggcgatcctgcccacgggcggg
ggcaagtcgctgtgcttccagctgccggccctggcccgctacgagcgcaccggcgcgctg
acggtggtgatctcgccgttgcagtcgctgatgaaggatcaggtcgataacctgatcgcg
cgcggcctcacctgtgccggctatctcaatgggatgctgacccccatcgagcgccgcgcc
atgctcgaccggctgcggctgggcgatctggggctgatcttcgtcgcccccgagcaattc
cgtagcaccgccttcgctcaggcgctcagccaccgcgagatcgccgcctggatcttcgac
gaggcgcactgtctgtcgaagtggggccacgacttccggcccgactatctctacgtctcc
aagttcatcaaggccacgcagaaggatcgctgttcgccggtcttcggcttcaccgccacc
gccaagcccgatgtcgtcgacgacatcgccgcgcacttccgcgagcggctgggcctggaa
ctcgaccggctcgaaggcggcgtgagccgggacaatctggtctatgaggtgcacgcggtt
ccggcccaagccaagcttggtgaggtgctgcgccggctgaaagaggcgctgcgcgaagag
ggcggcgccatcatcttctgcgcccgccagaagacggctcaggaaaccgctgaatttctc
acgcaagccgggatcgactgcgcctacttccacggcggcctggattccgacatcaagcgt
gcggtgcaggaggatttcatcgccggccgtcggcgcgtgatcgccgcgaccaacgccttc
ggcatgggcgtcgacaaacccgatgtgcggctggtgatccatctcgacacgccgggatcg
ctggaaaactacatccaggaggccggacgcgccgggcgcgatcaggagccggcccaatgc
gtgctgctctacgatgatgccgatctcgacatccagttcaacctgctcaagcgctcgcgt
ctgagccagaacgacatccgggccattctcaaggccatccgggccatcgagcgcaaggat
cgcagcgagggcgaggtggtcgtcaccacgggcgaaatcctgctggagaccccggagtca
caccgcatcgaggccgacgaccggcaggccgacaccaaggtccgcatcgccatcgcctgg
ctggaggaagcgcgcctgctggagcggcaggagaaccacacccgcgtctttcccggcagt
ctgcgggtcacggccctcgatgaggctgtggcgatactgcgcaagcggctcggccctcag
accgagattgcgccctatgaagccatcctgcgcgaactgatcgaggccggagacgatgaa
agccgctcgaccgacgatctcatgctggccaccgggctggattcgcgccggctccgggcc
atgctgcgcgagctcgaccaatggggactgctcgccaacgaaaccgagatcggcgtcacc
ctctatcgcgacccggccacgcgcgaccggctcgacgaactcacgcgcctggaaacggcc
ctgattgcgcagttgcgcgaggccgcgccggacgccgaccaggatgaagggtggcagatc
ctcaatgtgcgccgcctctgcgacaccctgcgccgcgagacgcacaccgacctcgatccc
cagcgcctgacacgcctgctcaagtccttcgctgaagcctttggcgacggagacggcgac
ggacaacgggccttcctgaagctgcgcccggccggggccgacaaccgctacatcaaactg
ctgcgcccctggagttcgatcgagttgatcagcgagcgccgccgacgcttcgctcaggcg
ctggtcgagtatgtctatcgcgtccgccagggcaacaacctacaggtggtgttcaagcag
cgtgaccttgaggactctttgaaaggggatctcacgctccaggatctggagatcaaggat
tgggaccgggcgctctcgtccgccctgctctatctggacgccaacgaagtcctcaaactt
tcgcgcggcaaggcgctcttccgctcggcgatgaacatcacgctcaacagcgaggcccgc
cgccgccagttcagcaagggcgattacgccgaactcgacctgcactaccgcgacaagatc
gttcaggtgcacgtcatgggcgagtacgcgcggctcggggcggtcaaggtccaggccgcg
atgcagttcatcgccgattacttccgcctggaacgcggcgagttcatccgccgccatttc
gccggacgcaaggagatcctggagatcgcgacctcggaagcggctcatcggcgcatcctg
gtcgatctgcgcaaccccgcccagcaagccatcgtcgccgccccgcccgagggcagtctg
ttggtgctcgccggtcccggctcgggtaagacgcgcgtgatcgtgcatagggtcgcgtgg
ctgttgcgccagggcatggcccatccgcaggacatcatggtgctcgcctacaaccgatcg
gcggtctccgagatccgccaccggctctgggcgctggtcgggccggaagccgtcggcgtc
agcgtgcagacggtgcatggtctggccatgcgcctgaccggcaccagctacgccgtggcc
ctggaacgcggtgagaagatcgacttcacgaccgtgctgcgccaggccacggcgcggctg
aaacaggccgagcgcgaggatgtcagcgaatcgaccgagcgggatcggctcttggccgga
ctgcgcttcctgctgatcgacgagtatcaggacatcaacggcgagcattacgacctcatc
agcgccgtggccgggcgcgcgctcgacagtgaagaggatcgcctgtcgctgatggccgtg
ggcgacgacgaccagaacatctatgccttcggcggggccgatatgcgcttcatccgccag
ttcgagaccgactaccaggcccgccgccatcagctgatcgaaaactaccgctcgacccgt
cacatcatcgcctgctccaaccgcgtcatcgccccggcgcgcgaccggatgaagacggac
gaagcgattcgcatcgaccacgcccgacgcgagcgaccggccggcggcgacctggaagag
cgtgatccggtcacgggcggacgggtgcaggtgctcgacgtctccgccgatccccggctc
gaagcccagatcgcgctggccgagcttcagcgtctctatgcggtcgaggacaccacgccc
gaaggacgctgggggcgcttcgcggtgatcgcgcggcagtggaaagacctggagccgctg
gccgcgctctgccgacggcgcggtgtcccggtgcggctgctgcgtgacgaccatcagccg
gacctccatcgcacgcgcgaaggccacgggctgctcgatctgctgcgcggcgaacagcgc
cgcacggccaagcgccgggtgctcgtgcgcgcccgtaccctctcgcgctggttccgacgc
cgttacggcctcccggttgacggactgatcgagcatccctttcgcgccgcgctggcccag
ttcatcgccgagaccgaatcagccgcgcccgaaggtcggcgcgtcgtcgaggatctgatc
gaggcgctatacgagttcggcagcgggggccggacgatggccgagtccagggccaatggc
ccgatggtgctgatgaccgcgcaccgcgccaagggactggagttcgaccatgtgctcatc
ctcgatggcgggggctggtcgagcggggacgacgaacgccggctctactatgtggccatg
acccgcgcgcggcgcagtctgacgctgtgcgagcggctggacgggcggcatcccttcgtg
cgcgcgaccgaggggctggccttgcgcacgcgaccgacggtgccggagttggaaccaggg
ctggatcaccggatctgggtcgccgatccctcgatggtctatctggactggccgggccga
ttcgccccgaatgcgccgatccatcgggcgctggcggccctggaggtcggcgatccgctc
gaactgcgtccgatgaaccggcgcgacggacagccgggctgggagttgggcgatcgccac
ggggttgtggtcgcgcggatggcggcgaagttccagccgccagtcggggagatcgtgacg
gtgcgggtggcggcggtgttggtcaggacggcgaagggggatgaggggttacggtgtgag
cggtgggagttggtgttggcggagattgaatacagagatacaaattaa
DBGET
integrated database retrieval system
