Acinetobacter lwoffii: FOB21_16810
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Entry
FOB21_16810 CDS
T06349
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alw
Acinetobacter lwoffii
Pathway
alw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOB21_16810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alw03400
]
FOB21_16810
Enzymes [BR:
alw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOB21_16810
DNA repair and recombination proteins [BR:
alw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOB21_16810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
RecG_dom3_C
Glyco_tran_WecG
Zeta_toxin
AAA_30
PML_CC
Motif
Other DBs
NCBI-ProteinID:
QGR76152
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All DBs
Position
3211255..3214713
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQQEISQLNLPQLKAGEKRWLGNLQGSSTALLLKEIVQQQSRLFIVIARNNQHLGQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPKTGVLLLSASTLAQRVAPT
SWILGEHFDIHVGQKFDLEQQKKKLIQAGYHLVDTVYDPGEFAVRGSIMDIYASGQEAPI
RIDLFDDEIESLKFFDSETQRTTQSLQQFTVLPAQEFPLKEGRATFRDRYAEFFPTANPK
KNPIYQDVMDGIVSPGIEFYLPLFFSAEAMQGQSSLISYLPKNGIVITDKALEESLSQFW
QDVVRRYEDRRHNVDQPIMPPESLFFQTNQVLEHLNQFARIIAAQTPFDQKAGVLNLDTQ
LPPRLPVDPKREKPFHEVKKYIDQANHPVLLVAESAGRRESLKDALRPSLGDIPTVENFD
SFIQSLYAIAITNAPLERGLVLTDRVSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELTMGAPVVHIDYGVGRYAGLVTLSIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWNKAKRKALEQIHDVAAELLHIQARRSSKPGISFEVDQSLYMQFAS
GFAYEETLDQANAIEATLHDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNRQVAIL
VPTTLLAQQHYDSFKDRFADWPVRIEVLSRFGSSKAHTKTIDDLIEGKVDIVIGTHKILQ
ENVQFKNLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDDTIKEAILRELLRGGQVYFLHNEVDTIDRAAEHIRKLVPE
ARVIVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLMVPSLKALKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEITLHMPALIPDE
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQPVKQLFAVHQIRLKAEQLGI
TKIDISSQGGHIEFAPDTPVQAMTIIQMMQKHPTYFRMDGGQRLKVMVMLEDYQKRIQFI
QDLLDSLLKELH
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgttccaacaagaaatttcccaactcaatttaccacagctcaaagcaggcgagaaacgc
tggttaggcaatctgcaaggttcctcaaccgcattattgcttaaagaaatcgtgcagcag
caatcgcgtttatttatcgtgattgcacgtaataatcagcatttgggtcaactggaaagt
gaactggaattttatgggattaaacccacgatttttccggattgggaaatcttgccttat
gatcgtctctccccacatcaggatattgtctcggaacgtctggcaatcttatccaatatg
cccaaaactggtgtactgttgttgtccgcctcaactttggcacaacgtgtggcgccaacc
tcatggattctgggtgagcatttcgatattcatgtcggtcagaaatttgatctggaacaa
caaaagaaaaagttgattcaggccggttatcatctggtcgataccgtctatgatccaggt
gaattcgcggtacgcggcagtatcatggatatctacgcatcgggacaggaagcaccgatt
cggattgacctgtttgatgatgaaattgaaagcctgaaattttttgattccgaaactcag
cgcaccacgcaaagtttgcagcagtttaccgtattgcctgcacaggaatttccgcttaag
gaaggtcgtgcgacgttccgtgaccgttatgccgaattttttccgactgcgaatccgaag
aaaaatccgatataccaggatgtgatggatggcatagtctctcctggaatcgagttttat
ttgcccttgttttttagcgctgaagcaatgcaaggtcaaagttcactcatttcgtactta
cctaagaatggcattgtcattacagataaggctttggaagaaagtctcagccagttttgg
caggatgttgtgcgccgttatgaagatcgtcgccacaatgtcgaccaaccgatcatgccg
cctgaaagcctgttttttcagaccaatcaggtgctggagcacttgaaccagtttgcacgc
atcattgccgcacaaacaccttttgatcaaaaagctggggtattgaatcttgatacccag
ttgccaccgcgtctacccgtagacccgaaacgtgaaaaaccgtttcatgaagtcaaaaaa
tatattgatcaggccaatcatccggtactgctggtggctgaaagtgctggacgccgtgaa
agtcttaaagatgcattaagaccaagtctgggtgatatccccacggttgaaaatttcgat
agttttattcaatctctgtatgcaattgccattaccaatgcgcctttggagcgtggtctg
gtattgaccgatcgtgtcagcgtaatttctgaaaatcagctctatgaacatcgggtggta
cagcgccgtcgcaaacgtcaacaggaagtttcagaagagtttctgatccgaagtctaact
gagctgaccatgggcgcacctgtggtgcatatcgattatggggtcggacgttatgccggt
ctggtcaccttaagtattgatgatcaggatcacgaattcctgcaactggattacgcagat
gccgccaaagtctatgtgccggtgaccaatctgcacttaatcagccggtatagtggtggt
gatccggatctggcaccgttgcataaactgggtacggatgcatggaataaagccaaacgt
aaagcgctggaacagattcacgatgtcgcggccgaattgctgcatattcaggcacggcgt
tcttccaaacctggaatcagttttgaagtcgatcaaagcctgtatatgcaatttgctagt
ggctttgcgtatgaagaaacactggatcaggccaatgcgattgaagcgacgttgcatgac
atgcagcaggccaagccgatggatcgtctggtgtgtggtgatgtgggtttcggtaagaca
gaagtcgcgatgcgtgccgcatttgttgcagtgcagaataatcggcaggtcgcgattctg
gtaccaaccaccttgctggcacagcagcattatgattcattcaaagaccgctttgccgac
tggccggtccgaattgaagtgctgtcacgtttcggttcttccaaagcacataccaagacc
attgacgacctgatcgaagggaaagtcgatattgtgattggtacacataagattttgcag
gaaaatgtccagtttaagaatctcggtctgatgattgtcgatgaagagcatcgtttcggt
gtgcgcgacaaggagcgaatcaaggccatgcgtgccgatgttgatatgctgacactgact
gcgactccaattccacgtacgctgaatatggcctttagtggcatgcgtgatctgtcgatt
atcgccacaccgccggcacgccgtcttgcggtgaaaacctttgtgcaggaacataccgat
gacaccattaaagaagcgattctgcgtgaattgctgcgcggtggtcaggtttattttctg
cataatgaagttgatacaatcgatcgtgccgccgagcatatccgtaaactggtgccggaa
gcgcgggtgattgtggcccacggacagatgcgtgaacgtgaactggagcaggtgatgcag
cagttctatcacaaggaatacaatgttctggtatgttcgaccattattgaaaccgggatt
gatgttccgaatgccaacaccattctgattgaacgtgccgacaaactgggcctggcgcaa
ttacatcagctacgcggacgtgtagggcgctcacatcatcaggcttatgcatatttgatg
gtaccgtcattaaaagccttaaaaggtgatgcagaaaaacgtctggatgccattcagcgt
gcttcaactttgggtgccggttttatgctggcaactgaagatctggaaattcgcggcgca
ggtgaattactcggtgaacagcagagtggttcgatgcaggcgattggttatagcctgtat
atggaaatgctggaaaaagccaccaaagccattcaaaaaggtaaaacgccaaacttcgac
gcaccattgtcattgactgccgaaattaccctgcatatgccagcactgattccggatgaa
tatctgggtgatgtgcatcaacgtctgttgttctataaacgcatcagtaataccgatacc
caggaaaagctggataatatccggatggaattgattgatcgttttggtataccgccgcaa
ccggtcaaacagctctttgctgtacatcagattcgattgaaagccgagcagcttggtatt
actaaaattgatatcagcagtcagggggggcatattgaatttgcaccggatactccggtt
caagccatgacgattatccagatgatgcagaaacatccgacctattttcggatggatggc
ggtcaacgtctaaaagtcatggtcatgctggaagactatcaaaagcggattcagtttata
caggatttactggacagtctgcttaaagaattgcactga
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