KEGG   Allobranchiibius sp. GilTou73: LVQ62_02610
Entry
LVQ62_02610       CDS       T07800                                 
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
alx  Allobranchiibius sp. GilTou73
Pathway
alx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:alx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LVQ62_02610 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:alx03400]
    LVQ62_02610 (uvrA)
DNA repair and recombination proteins [BR:alx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LVQ62_02610 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LVQ62_02610 (uvrA)
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind AAA_21 AAA_16 AAA_29 DnaJ_CXXCXGXG nSTAND1 AAA_22 RsgA_GTPase AAA_33 NACHT AAA_25 MeaB Viral_helicase1 DUF4350 AAA_14 SLFN-g3_helicase NTPase_1 DUF87 cobW MobB DUF5351 DUF463 Anti-TRAP
Other DBs
NCBI-ProteinID: UIJ35299
LinkDB
Position
complement(539833..542310)
AA seq 825 aa
MPDDPIDHFVHVRGASEHNLKHIDVDLPRDAMVAFTGVSGSGKSSLAFGTLYAEAQRRYF
ESVAPYARRLLQQVGAPHVQEITGLPPAVALQQRRGAPSSRSTVGTLTTLSNLLRMLYSR
AGTYPQGAKRLGAEAFSPNTAAGACPVCHGLGEVHDVAEDLLVPDPSLSIRDGAIAAWPG
AWQGKNLLRITKTVGIDVDVTWRDLARKDRDWLLYTDEQPRVLIDRRGEADDSTGRDYYG
TFWSARKYVRHTLADTKSQMMRDKAMRFVRSDTCTACGGTGLQPDSLAVTVRGLNIAAMN
ALSFVELIALLRPVAELTRAGAATSYADSGEATEVAVRLAGDLVSRVQVLLDLGLGYLSL
GRSSTTLSPGEAQRLRIATQLRSGLFGVVYVLDEPSAGLHPADAAPLLDVLDRLKSSGNS
LFVVEHDLDVVRRADWIIDIGPGAGEHGGQVLYSGPVDGLEQVEESVTGDYLFGRAEPLE
RPGRTPHGWLHLQGITRHNLSDLSVDVPLCVLTAVTGVSGSGKSTLVTQVLSELVRQHLG
QASDEEEDTAFAVDVDDATGLESFDRLVRVDQRPIGRTPRSNLATYTGLFDAVRKLYAAT
PEARERGYGVGRFSFNVAEGRCETCQGEGFVSVELLFLPGTYAPCPTCHGARYNAETLEI
EYRDRNIADVLGLSVEEAADFLADVPSAARSLTTLREVGLGYLRLGQPATELSGGEAQRI
KLATELQRARRGHALYLLDEPTAGLHPADIALLVRQLHRLVDAGNTVVLVEHDLDTIASA
DWVIDLGPGGGDAGGRVVATGTPEEVARATGSATAPYLRARLTDS
NT seq 2478 nt   +upstreamnt  +downstreamnt
gtgcccgatgacccgatcgaccacttcgttcacgtccgcggagccagcgagcacaacctc
aagcacatcgacgtcgacctcccgcgcgacgcgatggtcgccttcaccggagtctccgga
tccggcaagtcctcgctggccttcggcacgctctacgccgaggcgcagcggcgctacttc
gagtcggtggcgccgtacgcgcgcaggttgctgcagcaggtgggcgcgccgcacgtgcag
gagatcaccgggctgccaccggcagtggcattgcagcaacggcgcggcgcaccgagctcc
cgctcgacggtcggcacgctgaccacgctgtctaacctgctgcggatgctctactcgcgc
gccggcacctacccgcagggcgcgaaacggttaggcgcagaggcgttctcgccgaacacc
gcggccggcgcgtgcccggtgtgccacgggctcggcgaggtgcacgacgtggccgaagac
ctgctcgtgccggacccgtcgctcagcatccgtgacggcgcgatcgccgcgtggccggga
gcctggcagggcaagaaccttctgcgcatcaccaagaccgtcggcatcgacgtcgacgtc
acgtggcgcgacctggcccgcaaggaccgcgactggctgctctacaccgacgagcagccg
cgggtgctcatcgatcgccgcggcgaggccgacgactccaccggccgcgactactacggc
accttctggagcgcgcgcaaatacgtgcggcacacgctggccgacaccaagagccagatg
atgcgcgacaaggcgatgcgcttcgtccgcagcgacacctgcaccgcgtgcggtggcacc
gggttgcagcccgactcgctggcggtcaccgtccgcggcctgaacatcgcggcgatgaac
gcgctctcgttcgtcgagctgatcgcgctcctgcggccggtcgccgagctgacgcgcgcg
ggcgccgcgacgtcgtacgccgactccggggaagcgaccgaggtggcggtgcgcctcgcc
ggcgacctggtgagccgagtccaggtgctgctcgacctcgggctgggctacctgtcgctg
gggcgcagctccacgacgctgtcgcccggcgaggcgcagcggctgcgcatcgccacccag
ctgcggtcgggtctcttcggggtggtctacgtcctcgacgagccgtccgcggggctgcac
cccgccgacgccgcgcccctgctggacgtgctggaccggctgaagagctcgggcaactcc
ctcttcgtcgtcgagcacgacctggacgtcgtacgccgcgccgactggatcatcgacatc
ggccctggggccggcgagcacgggggacaggtgctctactccggcccggtcgacggcctc
gagcaggtcgaggagtcggtcaccggcgactacctcttcggtcgcgcggaaccgctcgag
cgcccgggtcgcacgccgcacggatggctgcacctgcaggggatcacccggcacaacctg
tccgacctcagcgtcgacgtgccgctgtgcgtgctgacggccgtcaccggcgtgtccggg
tcgggcaagtcgacgctggtcactcaggtgttgtcggagctggtgcgtcagcacctcggg
caggcgagcgacgaggaagaggacacggcgttcgcggtggacgtcgacgatgccaccggg
ctggagtcgttcgaccggctcgtgcgggtcgaccaacgcccgatcgggcggactccgcgt
tcgaacctcgcgacgtacacagggctcttcgatgcggtgcgcaagctgtacgccgccact
ccggaggcccgcgagcgcgggtacggcgtgggccggttctccttcaacgtcgccgaggga
cggtgcgagacctgccagggcgaggggttcgtgtccgtcgagctgctcttcctgcccggc
acgtacgcgccgtgccccacctgccacggcgcgcgctacaacgcggagaccctggagatc
gagtaccgcgacaggaacatcgccgacgtgctgggcctgtcggtcgaggaggccgccgac
ttcctggccgacgtgccttcggccgcccgcagcctgaccacgctgcgcgaggtcgggctg
ggctatctgcggctggggcagccggcgaccgagctcagcggcggagaggcccagcggatc
aaactggcgaccgagctgcagcgcgcccgccgcgggcacgcgctctacctgctcgacgag
cccactgccgggttgcaccctgccgacatcgcgctgctggtgcggcagctgcaccggctg
gtcgacgccggcaacaccgtggtgctggtcgagcacgacctggacaccatcgccagcgcg
gactgggtgatcgacctcgggccgggcggcggcgacgcggggggccgcgtggtggcgacc
ggcacgcccgaggaggtcgcccgagccaccggcagtgcgacggcgccgtacctgcgcgcc
cgcctgaccgactcctag

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