Allobranchiibius sp. GilTou73: LVQ62_10235
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Entry
LVQ62_10235 CDS
T07800
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
alx
Allobranchiibius sp. GilTou73
Pathway
alx03030
DNA replication
alx03430
Mismatch repair
alx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVQ62_10235 (dnaE)
03430 Mismatch repair
LVQ62_10235 (dnaE)
03440 Homologous recombination
LVQ62_10235 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alx03032
]
LVQ62_10235 (dnaE)
03400 DNA repair and recombination proteins [BR:
alx03400
]
LVQ62_10235 (dnaE)
Enzymes [BR:
alx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LVQ62_10235 (dnaE)
DNA replication proteins [BR:
alx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LVQ62_10235 (dnaE)
DNA repair and recombination proteins [BR:
alx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LVQ62_10235 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
OB_MCM10
Motif
Other DBs
NCBI-ProteinID:
UIJ33553
LinkDB
All DBs
Position
2054438..2058004
Genome browser
AA seq
1188 aa
AA seq
DB search
MSSSPASNFVHLHVHTEYSTLDGAAKIKPMFAEAERLGMPAIAMSDHGNMFGAYEFQLAA
QGSPVRPIIGIEAYVAPSTRHSRTQEFWAGSRDRDANVDGEGGKDVSGGGRYTHMTMWAQ
DAHGLRNLFKLSSLASFEGYYMKPRMDRELLAEHGRGIIATTGCPSGEVQTRLRLGQYDE
AIAAASAYQDIFGADNYFLELMDHGLSIERQVRDGLLKIARELHIPLLATNDSHYVTEDQ
ADAHDNLLCVGVGKNKDDPHRFKFNGTGYYLKTAEQMRELFAELPEACDNTLAIAERIED
YSEVFAPVDRMPQFPDVPEGQTQAAYLREQITVGLKERYGDDPGPEVLERIETEMAVIEP
MGFSSYFLVVADICRYARDNGVPVGPGRGSATGSMVAYLTRITELDPLEHQLLFERFLNP
ERINPPDVDLDFDDRQRDKMVRYVTTKYGAEYTAQVNTFSTIKAKAAVKDANRILGFPFA
LGEQISKAMPPDVMGKGVPLTGLFDPKHPRYTEATEFRALYEAQPEVRKVVDTGRGLEGM
IRGTGVHAAAVILSSEPLLDLIPMHRRDKDGTIIAGFSFPHCEEMGLVKMDFLGLRNLGI
IDQALGNINTNRGVHLTTATIPLEDEATYQLLARGETLGVFQLDGGPMRSLLRLMAPTRF
EDIAAVLALYRPGPMAANAHINYAERKNGRQAITPIHPELKDALEPILGTTYHLLVYQEQ
LMAIARELAGYTLGGADLLRRAMGKKKIEILEKEFGNFEAGMVASGYSAEATKALWDVML
PFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYAAALLTSVEGDKTKMATYLADTRKLGI
KVLPPDVNESVADFTAVGTDIRFGLAAIRNVGGNVVEAIVKAREEKGRFASFEDFLRKVP
AVVCNKRTIESLVKAGAFDDLQHPRQGLVHIHEAYVDAVAEEKRFEERGQDSLFGGFGDE
AAIELAALPAIPEIEWDKPTLLAFERDMLGLYVSDHPLFGIEHILSQHADMSIARLHGED
APKDGAQLTIAGLITGMQLKRNKRGELWAIATVEDLEGAVEVMFFAKTYMTVSTMLNPDV
VCVIKGRFQMRDDGPQLMASELTLPELKGDVRGPVVLTMPLARANTGLAHKLRTVLVEHP
GATEVHLKLHQPGRSVTVKLEDSLRVTASPALFGDLKALLGPSCLVGA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcgcctgcctcgaacttcgtgcacctgcacgtgcacaccgagtactccacg
ctggacggggcggccaagatcaagccgatgttcgccgaggcggagcggctcgggatgccc
gccatcgcgatgtcggaccacggcaacatgttcggcgcctacgagttccagctggccgcg
cagggcagccccgtccggccgatcatcggcatcgaggcctacgtcgcaccctccacccgg
cactcgcgcacccaggagttctgggccgggtcgcgcgaccgcgacgccaacgtcgacggg
gagggcggcaaggacgtctccggaggcggtcgctacacccacatgaccatgtgggcgcag
gacgcgcacgggttgcgcaacctgttcaagctgagctcgctggccagtttcgagggctac
tacatgaagccccggatggaccgggagctgctcgccgagcacggcaggggcatcatcgcc
accaccggctgcccctccggagaggtgcagacccggctgcggctgggtcagtacgacgag
gcgatcgcggcggcatcggcgtaccaggacatcttcggtgcggacaactacttcctcgag
ctgatggaccacgggctgtcgatcgagcggcaggtgcgcgacggcctgctgaagatcgcc
agagagctgcacatcccgctgctcgcgaccaacgacagccactacgtcaccgaggaccag
gccgacgcgcacgacaacctgctgtgcgtcggagtcggcaagaacaaggacgatccgcac
cgcttcaagttcaacgggaccggctactacctgaagaccgccgagcagatgcgcgagctc
ttcgccgagctgccggaggcgtgcgacaacaccctcgccatcgccgagcgcatcgaggac
tacagcgaggtcttcgcgcccgtcgaccggatgccgcagttccccgacgtccccgagggc
cagacccaggcggcgtacctgcgcgagcagatcaccgtgggtctgaaggagcggtacggc
gacgaccccggccccgaggtgctcgagcgcatcgagaccgagatggccgtcatcgaaccg
atgggcttctcctcctacttcctcgtggtcgccgacatctgccgctatgcgcgcgacaac
ggcgtaccggtgggcccgggacgaggctcggcgaccgggtcgatggtggcctatctgacc
cggatcaccgagctggatccgctggagcaccagctgctcttcgagcgcttcctcaacccc
gagcggatcaacccgccggacgtcgacctcgacttcgacgaccgccagcgcgacaagatg
gtccgctacgtcacgaccaagtacggcgccgagtacaccgcgcaggtcaacaccttcagc
accatcaaggccaaggccgcggtcaaggacgccaaccggatcctgggcttcccgttcgcg
ctcggcgagcagatcagcaaggccatgccgccggacgtgatgggcaagggcgtgccgctc
accggcctgttcgatcccaagcacccgcggtacaccgaggcgaccgagttccgggcgctc
tacgaagcgcagcccgaggtccgcaaggtcgtcgacaccgggcgtgggctggaggggatg
atccgcggcaccggcgtgcacgccgcagcggtcatcctgtcctccgagccgctgctcgac
ctcatcccgatgcaccgccgggacaaggacggcaccatcatcgccggcttctccttcccg
cactgcgaggagatgggcctggtcaagatggacttcctgggcctgcgcaacctcggcatc
atcgaccaggccctcggcaacatcaacaccaaccgcggcgtacacctcaccacggccacc
atcccgctggaggacgaggcgacctaccagctgctggcgcgcggcgagaccctcggtgtc
ttccagctcgacggcgggccgatgcgcagcctgctgcgcctcatggcgccgacccggttc
gaggacatcgcggccgtgctggcgctctaccgacccggcccgatggctgccaacgcgcac
atcaactacgccgagcgcaagaacggccggcaggccatcaccccgatccacccggagctc
aaggacgcgctcgagccgatcctcggcacgacgtaccacctgctcgtctaccaggagcag
ctcatggccatcgcccgcgagctcgcgggctacaccctgggcggcgccgacctgctgcgc
cgggcgatgggtaagaagaagatcgagatcctggagaaggagttcggcaacttcgaggcc
ggcatggtcgccagcggttacagcgccgaggcgaccaaggcgctctgggacgtgatgctg
cccttctccgggtacgcgttcaacaagagccacaccgccgggtacggcctcgtgtcgtac
tggaccgcctacctcaaggccaactacccggccgagtacgccgccgcgctgctgaccagc
gtcgagggcgacaagaccaagatggccacctacctggccgacacccgcaagctcggcatc
aaggtgctgccaccggacgtgaacgagtcggtcgccgacttcaccgccgtcggcaccgac
atccgcttcgggctggccgcgatccgcaacgtcggcggcaacgtcgtggaggcgatcgtc
aaggcgcgcgaggagaagggccgcttcgcctcgttcgaggacttcctgcgcaaggtgccc
gccgtcgtctgcaacaagcggaccatcgaatcgctggtcaaggcaggagcgttcgacgat
ctgcagcacccgcggcaggggctggtgcacatccacgaggcctatgtagacgccgtcgcg
gaggagaagcgcttcgaggagcgtgggcaggactccctcttcggcgggttcggcgacgag
gctgctatcgagctggcggcgctgcctgcgatccccgagatcgagtgggacaaacccacc
ctgctggcgttcgagcgggacatgctggggctctacgtctccgatcacccgctcttcggg
atcgagcacatcctgtcccagcacgcggacatgtcgatcgcccgtctgcacggcgaggac
gcacccaaggacggcgcgcagctgaccatcgccgggctgatcacggggatgcagctgaag
cgcaacaagcgcggtgagctgtgggcaatcgcgaccgtggaggacctcgagggcgccgtc
gaggtgatgttcttcgcgaagacctacatgaccgtgtccaccatgctcaaccccgatgtg
gtctgcgtgatcaagggtcgcttccagatgcgcgacgacggcccgcagctgatggcctcc
gagctgacgctgccggagctcaagggcgacgtacgcggcccggtcgtgctcaccatgccc
ctggcgcgggccaacaccgggctcgcgcacaaactgcgcaccgtgctggtcgagcacccc
ggcgccaccgaggtgcatctgaaactgcatcaacccggtcgatccgtcaccgtcaagctg
gaggactccttgcgcgtcaccgcatcacccgctctgttcggcgacctcaaggcgctgctc
ggcccgtcctgcctggtaggtgcatga
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