Allobranchiibius sp. GilTou73: LVQ62_11425
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Entry
LVQ62_11425 CDS
T07800
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alx
Allobranchiibius sp. GilTou73
Pathway
alx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVQ62_11425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alx03019
]
LVQ62_11425
03009 Ribosome biogenesis [BR:
alx03009
]
LVQ62_11425
Enzymes [BR:
alx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVQ62_11425
Messenger RNA biogenesis [BR:
alx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVQ62_11425
Ribosome biogenesis [BR:
alx03009
]
Prokaryotic type
rRNA helicases
LVQ62_11425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
HEM4
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UIJ36564
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All DBs
Position
2308627..2310378
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AA seq
583 aa
AA seq
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MPTFAELGLPEKVQAVLRDVGYETPSAVQAATIPPLLEGRDVVGVAQTGTGKTAAFALPI
LSRLDLTQKAPQALVLAPTRELALQVCEAFEKYAAHLKGVKVLPVYGGQGYGVQLSALRR
GVHVVVGTPGRIMDHLDKGTLDLTQLRFLVLDEADEMLKMGFAEDVETILADTPRDKNVA
LFSATMPAQIRRLSKKYLDDPVEITVKGKTSTAANITQRYLTVSYPQKVDALTRILEVEN
FEGMIVFVRTKNETETLAEKLRARGFSATAINGDVAQNVRERTVNQLKSGALDILVATDV
AARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFITPRERYLLKHIEKAT
RQPLTQMSWPSVEDVNTTRLARFDDQITEALQARDRIEGFREIVAHYVREHDVPEVDVAA
ALAVVAQGEEPLLLDPLAEKSRRTERPAREERPDRGGGSKSSRGDRGARPERGAQHERRA
RPGHTTFASYRINVGKRHKVEPRQIVGAIANEGGLSHGDFGAISIRPNFSLVELPADLPP
EVFDKLRTTRISGRLIDLADDDGTKGSAESFQDRATRKPRHKG
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccttcgccgagctcgggttgcccgagaaggtgcaggccgtgttgcgtgacgtg
ggctacgagaccccgtcggccgtgcaggccgcgaccattccgccgctgctcgagggccgg
gacgtcgtcggcgtcgcgcagaccggcaccggcaagaccgcggcgttcgccctgccgatc
ctgtcccgcctggacctcacgcagaaggcgccgcaggcgctcgtgctcgccccgacgcgc
gagctcgcgctgcaggtatgtgaggccttcgagaagtacgcagcccacctcaagggcgtc
aaggtcctgcccgtctacggcggccaggggtacggcgtgcagctctccgcgctgcgccgg
ggcgtccatgtggtcgtcggcactcccggtcggatcatggaccacctcgacaagggcact
ctcgatctgacccagttgcgcttcctggtgctcgatgaggccgacgagatgctcaagatg
ggcttcgccgaggatgtcgagacgatcctggcagacactcccagggacaagaacgtcgcg
ctgttctcggccacgatgccggctcagatccgccggctgtcgaagaagtacctcgacgac
cctgtcgagatcaccgtcaagggcaagacgtccacggcggccaacatcacccagcgctac
ctcacggtgagctatccgcagaaggtcgacgctctgacgcggatcctggaggtcgagaac
ttcgagggcatgattgtgttcgtccgcaccaagaacgagaccgagactctggccgagaag
ctgcgggcccggggattctcggccacggcgatcaacggcgacgtggcccagaacgtccgg
gagcggaccgtgaaccagctcaagtccggcgccctggacatcctggtggccaccgacgta
gcggcccgcggcctcgacgtggaacggatcagccacgtggtgaactacgacatcccgacc
gacaccgagtcctacgtgcaccgcatcgggcgcaccggccgggccgggcgcagcggcgat
gcgatctcgttcatcactccgcgggagaggtacctgctcaagcacatcgagaaggccacc
cgccagccgttgacccagatgtcctggcccagcgtcgaggacgtcaacaccacgcgtctg
gctcgcttcgacgaccagatcaccgaggcgctgcaggcgagggatcgcatcgaggggttc
cgagagatcgtggcccactacgtccgcgagcacgacgtgcccgaggtcgacgtggccgcc
gcgctggccgtggtggcccagggcgaggagccgctgctgctcgacccgctcgccgagaag
tcgcggcgcaccgagcgccccgcccgtgaagagcgacccgaccgcggcggcggcagcaag
tccagccgtggcgatcgcggcgcccggcccgagcgcggcgcccagcacgaacgacgggcc
cggcccggccacacgacgttcgcgagctaccggatcaatgtcggcaagcggcacaaggtg
gagccgcgccagatcgtcggcgccatcgccaacgagggcggactgagccacggcgacttc
ggcgccatctcgatccggcccaacttctcgctcgtggagctgccggccgacttgcccccc
gaggtcttcgacaagctgcgcaccacccgcatctcgggcaggttgatcgacctagccgat
gacgacggcacgaagggctccgcggagtccttccaggaccgggcaactcgcaagccccgc
cacaagggctga
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