Allobranchiibius sp. GilTou73: LVQ62_12270
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Entry
LVQ62_12270 CDS
T07800
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
alx
Allobranchiibius sp. GilTou73
Pathway
alx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVQ62_12270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alx03019
]
LVQ62_12270
03400 DNA repair and recombination proteins [BR:
alx03400
]
LVQ62_12270
Enzymes [BR:
alx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVQ62_12270
Messenger RNA biogenesis [BR:
alx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVQ62_12270
DNA repair and recombination proteins [BR:
alx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LVQ62_12270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
UIJ33911
LinkDB
All DBs
Position
2486620..2488743
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AA seq
707 aa
AA seq
DB search
MTQTPTATTATPAGTPDIDQVAARVLADLAGPGAQLRDGQGEALHALTRPGARVLVVQAT
GWGKSAVYWIATAWSRQAGRGPTLVVSPLLSLMRDQVAAAGRARLRAATINSSNIDSWSS
IEADLASGDLDVILVSPERLANPGFGARVMQTLAGRLGLVVIDEAHSVSDWGHDFRPDYR
RVSDVLQKVHPDLPVLATTATANSRVVEDLARQFGTDTTVLRGPLARSSLELAVLPTMGP
LERYAWVVDHLPTLPGSGIIYALTVADAERLTQALRTRYADDPALRVAAYTGGLEAGERE
RLEDALRAGEVKALVATSALGMGYDKPDLGFVVHVGAPPSPVSYYQQVGRAGRAIDHAPV
ALLPSAGDEGVWDYFATATIPREDDVRRLLASLGDANAPQSVPALEAETGLRRGKIELLL
KQLAVDEVVTRATDGWSVTGAPWTYDAAHYEGVLAGRRREADIMRAYIAGERCLMALLQE
SLDDPAAQPCGRCSVCTGHLPDGWSDHADPQTVRDLAAVLRADQQVLEPRKMWPGGAFGA
KGRIPPQLAAAPGRVLVHADAAEWSELRAGPLRHDAAAPPELQEAAVRVLAGWKDDWPAR
PDLVVSCAVEGHPELTSSLAEQLATVGRMTYTAWSVGTPDVIDLASADEAAAWRTAFAGS
DLPSVGGQTVLLVLDASRSGWSVTVAAAMLRDAGASAVLPLLIHRTV
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgacccagacacccaccgccacgaccgccacgcctgccggaacccccgacatcgaccag
gtcgccgcgcgggtgctcgccgacctggcgggaccgggcgcgcagctgcgcgacggccag
ggcgaggccctgcacgcgctgacccgacccggcgcccgggtgctggtcgtgcaggcgacc
gggtggggcaagtcggcggtctactggatcgccaccgcgtggagccggcaggcgggtcgg
ggcccgacgctggtcgtctcgccgctgttgtcgctgatgcgcgaccaggtggccgctgcc
gggagagccaggctgcgcgccgcgaccatcaacagctccaacatcgacagctggagctcg
atcgaggccgatctggcctccggcgacctcgacgtgatcctggtgtcgccggagcgactg
gccaacccagggttcggcgcccgcgtcatgcagaccctcgccgggcggctcggcctggtc
gtcatcgacgaggcgcactcggtctcggactggggccacgacttccgcccggactaccga
cgggtgtcggacgtgctgcagaaggtccaccccgatctgccggtcctcgcgaccaccgcg
accgcgaactcccgggtcgtcgaggatcttgcccgtcagttcggcaccgacaccaccgtg
ctgcgcgggcccctggcgcgttccagcctcgagctggcggtgctgccgacgatgggtccg
ctggagcgttacgcctgggtcgtcgaccacctgccgaccctgcccggctcgggcatcatc
tacgccctcaccgtcgccgacgcagagcggctcacccaggcgctgcgcacccggtacgcc
gacgaccccgcgctgcgcgtcgccgcgtacaccggtggtctggaggcgggggagcgcgag
cggctggaggacgcgctgcgcgcgggcgaggtcaaggcgctggtcgccacctcggcgctg
ggcatggggtacgacaagcccgacctggggttcgtggtgcacgtgggtgcgccgccgtcg
ccggtgtcctactaccagcaggtcggccgtgccggccgcgcgatcgaccacgcgccggtc
gcgctgctgccgtccgccggcgacgagggcgtgtgggactacttcgcgacggcgacgatc
ccgcgcgaggacgacgtacgccggctgctcgcctcgctgggcgatgcgaacgcaccgcag
tcggtgcccgcgctggaggccgagaccggtctgcgacgcggcaagatcgagctgttgctc
aagcagctcgccgtcgacgaggtcgtcacccgcgcgacggacggttggagcgtcaccggc
gcaccgtggacctacgacgccgcccactacgagggcgtcctcgccggccgccgccgcgag
gccgacatcatgcgcgcctacatcgcgggcgaacgttgcctgatggcgctgctgcaggag
tcactcgacgacccggccgcgcagccgtgcggacgctgctcggtgtgcaccggccacctc
ccggacggctggtccgaccacgccgatccccagaccgtgcgcgacctcgcggccgtgctg
cgcgcagaccagcaggtgctggagccgcgcaagatgtggccgggcggtgcgttcggcgcc
aagggccgcatcccgccgcagctggcggccgcgcccggtcgcgtgctcgtgcacgccgac
gccgccgagtggagtgagctgcgggccggtcccttgcgccacgacgcggccgcaccaccg
gagctgcaggaggccgccgtacgcgtgctcgcgggctggaaggacgactggcccgcccgt
ccggatctggtcgtctcctgcgcggtggaggggcatcccgagctcacctcgtccctggcc
gagcagctggccaccgtcggccggatgacgtacaccgcgtggtcggtgggcactcccgac
gtcatcgatctggcgtccgcggacgaggccgccgcatggcggaccgcattcgcaggcagc
gacctgccgtcggtcggcggacagaccgtcctgctggtgctcgacgcctcgcggtcggga
tggtcggtcacggtcgctgcggccatgctgcgcgatgcgggggcgagcgcggtcctgccg
ctgctcatccaccgcaccgtctga
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