Arabidopsis lyrata (lyrate rockcress): 110224571
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Entry
110224571 CDS
T01578
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110224571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
110224571
03036 Chromosome and associated proteins [BR:
aly03036
]
110224571
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110224571
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
110224571
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
PilN
Motif
Other DBs
NCBI-GeneID:
110224571
NCBI-ProteinID:
XP_020866468
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MFGSSNPFGQSSGTSPFGSQSLFGQTSNTSSNNPFAPATPFGTSAPFAAQSGSSIFGSTS
TGVFGAPQTSSPFASTPTFGASSSPAFGNSTPAFGASPASSPFGGSSGFGQKPLGFSTPQ
SNPFGNSAQQSQPAFGNTTFGSSTPFGATNTPAFGASSTPAFGATSTPSFGASSTPAFGA
TNTPAFGASNSPSFGATNTPAFGASPTPAFGSTGTTFGNTGFGSGGAFGASSTPAFGASG
TPAFGASGTPAFGASSTPAFGASSTPAFGASSTPAFGGSSTPSFGASNTSSFSFGSSPAF
GQSTSAFGSSTFGSTPSPFGGQGAQASTPTFGGSGFGQSTFGSQQGGSRAVPYAPTVEAE
TGTGTQPAGKLESISAMPAYKDKNHEELRWEDYQRGDKGGQLPAGQSPGNAGFGISPAQP
NPFSPSPAFGQTSANPTNPFSSSTSTNPFAPQTPTIASASFGTATSNFGSSPFGVTSSSN
LFGSGSSTTTSVFGSSSAFGTTTSSPLFGSSSTPGFGSSSSIFGSAPGQGATPAFGNSQP
STLFNSTPSTGQTGSAFGQTGSAFGQFGQSSAPAFGQNSIFNKPSTGFGNMFSSSSTLTT
SSSSPFGQTMPAGVTPFQSAQPGQASNGFGFNNFGQNQAANTTGNAGGLGFFGQGNFGQS
PAPLNSVVLQPVAVTNPFGTLPAMPQISINQGGNSPSIQYGISSMPIVDKPAPVRISSLL
TSRHLLHRRVRLPARKYRPGENGPKVPFFTDDEESSSTPKADALFIPRENPRALVIRPVQ
QWSSRDKSILPKEQRPTAPVHDNGKSPDMATDAANHDRNGNGELGATGERIHTSVNANQK
PNGTTRSDQASEKERPYKTLSGHRAGEAAIVYEHGADIEALMPKLRQSDYFTEPRIQELA
AKERADPGYCRRVRDFVVGRHGYGSIKFMGETDVRRLDLESLVQFNTREVIVYMDESKKP
AVGQGLNKPAEVTLLNIKCIDKKTGKQFTEGERVEKYKMMLKKKAEAQGAEFVSFDPVKG
EWKFRVEHFSSYKLGDEDEEDGV
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtttggctcatccaatccttttggacagtcatctggtaccagcccatttgggtcccaa
tctttgtttggtcagaccagcaatacaagtagtaataatccctttgctccagctactccg
tttggcacgtctgctccttttgctgcacagtcgggaagttcaatatttggaagcacttca
accggtgtgtttggtgcacctcaaacatcctctccctttgcctccaccccaacttttgga
gcttcttcatcaccagcatttgggaattccactccggcctttggagcatctccagcatct
tcaccttttggtggatcttctggttttgggcagaaacctttgggattttcaacgcctcag
tcaaatccttttggaaactccgcgcagcaatcccaacctgcatttggaaacaccactttt
ggttcgtctacaccttttggtgccactaacacgcctgcctttggcgcttcaagcacgcct
gcttttggcgccacaagcacaccctcgtttggtgcatcaagcacgcctgcctttggtgcc
acaaacacgcctgccttcggtgcctcaaactctccctcctttggcgccacaaacacacct
gcatttggcgcgtcaccgactccagcttttggtagcactggcaccacgtttggcaacact
ggctttggctctggaggtgcttttggagcttcaagcacccctgcttttggtgcatcaggc
actccggcttttggtgcatcaggcactcctgccttcggtgcatcaagtactcctgccttt
ggggcatccagtactcctgcctttggggcatccagtactcctgcctttgggggatctagt
actccttcttttggtgcatcaaatacctcatcctttagttttggctcgtctccagctttt
ggccagtctacatcagcctttggtagcagcacctttggctctacaccatctccctttgga
ggtcaaggtgcgcaggcttcaacccctacatttgggggttctggttttggtcaatcaact
ttcggtagtcaacaagggggcagtcgagctgtgccttatgcaccaacagttgaggcagag
acagggaccggtactcagcctgctggaaagttggaatctatttctgccatgccagcatac
aaagataaaaaccatgaggagcttaggtgggaagattaccagcgaggagataaaggtgga
caacttcctgctggccagtctcctggcaatgccggatttggtatatcacctgctcaacca
aatcctttttctccatcaccggcgtttggtcagacatcagcaaatccaacaaaccctttt
tcgagctcaacatctaccaacccttttgcccctcaaaccccaacaattgccagtgcgagt
tttggaacggctacctcaaattttggttcctcgccctttggtgtaacatcttcttccaat
ctttttggttcaggttcatcaactaccacatccgtttttggatcatcctccgcttttgga
acaacgacatcatcaccgttatttggttcatcaagcactccgggatttggctcttcttca
tcaatctttggttcagctcctggtcagggggcaactccagcatttggcaacagtcagcca
tctactctgttcaattcaaccccttcgaccggacagactggttcagcgtttggacagact
ggttctgcttttggacagttcggacagagtagtgctcctgcatttggccaaaatagcatt
tttaataaaccttccactggatttggaaacatgttttcaagttcttcaacattaactacg
tctagcagctctccctttggacaaacaatgcctgctggtgtgacaccctttcaatcagct
cagccaggtcaagcatcaaatggttttggtttcaacaacttcggtcaaaatcaagcagct
aatacaactggaaatgctggtggactgggattttttggtcaaggcaacttcgggcaatcg
cctgctccgctgaactctgttgttttgcaaccagttgctgttacaaacccatttggaaca
cttcctgctatgcctcagatttcaataaatcaaggtggaaattcaccttccattcaatat
ggaatctccagcatgcctattgttgacaaacctgctcctgttagaatatcatctctcctg
acttctcgacacctattacacaggcgggtcaggctgccggcaagaaagtaccgtcctggc
gagaatggtccaaaggttccatttttcactgatgacgaggagagctcaagtacaccaaag
gcggatgctcttttcattccaagggagaaccctagagctctagttatacgcccagttcaa
cagtggtcttcaagggataaatcaatacttccaaaggaacaacgcccgactgctccagta
catgacaatgggaagagtcctgacatggccactgatgcagcaaaccatgacagaaatggt
aacggagaacttggtgctactggagaaagaattcatacatcagtcaatgcaaatcagaaa
ccgaatggcacaacacgctcagatcaggccagcgagaaagagcgtccctacaaaacacta
agtggacacagagcaggagaagccgcgattgtttatgagcacggtgcagatatcgaggct
cttatgccgaagctacgacaatctgattatttcacagagccacgtatccaggaactagca
gctaaggaaagagcggatccgggttactgcaggcgggtaagagactttgtggtgggacga
cacggttatggtagcataaagttcatgggagagacagatgtgcgtaggctagacttggaa
tcactggttcagttcaatacacgggaagtgattgtatacatggacgagagcaagaaaccg
gctgttgggcaaggtttgaataaaccggcggaagtaacgttgctgaacataaaatgtatt
gataagaagacagggaaacagtttactgaaggagagagagtggagaagtataagatgatg
cttaagaagaaagctgaggcacaaggagctgagtttgtgtcatttgatccagtgaaaggc
gaatggaagtttcgggtcgagcattttagttcgtataagctgggcgacgaagatgaagaa
gatggagtttag
DBGET
integrated database retrieval system
