Arabidopsis lyrata (lyrate rockcress): 110224750
Help
Entry
110224750 CDS
T01578
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110224750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
110224750
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110224750
Spliceosome [BR:
aly03041
]
Complex C
Other components
Step II factors
110224750
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
ABC_tran
nSTAND_NTPase5
nSTAND3
SLFN-g3_helicase
ATPase_2
AAA_30
NAT10_TcmA_helicase
NB-ARC
AAA_16
DAP3
AAA_29
Sigma54_activat
T2SSE
PhoH
NPHP3_N
AAA_33
TsaE
SRP54
AAA_23
FtsK_SpoIIIE
nSTAND6
AAA_7
nSTAND1
RsgA_GTPase
G-alpha
Motif
Other DBs
NCBI-GeneID:
110224750
NCBI-ProteinID:
XP_020867333
LinkDB
All DBs
Position
Unknown
AA seq
700 aa
AA seq
DB search
MANLPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTKSGVIAITQPRRV
AAVSVARRVAQELDVPLGEDVGYAIRFEDRTSTKTRIKYLTDGVLLRESLSNPMLDDYSV
IILDEAHERSLNTDILLGLVKRLVRIRASNFKVLITSATLDGEKVSEFFSGCPVLNVPGK
LYPVEILYSKERPVSYIESSLKVAIDIHVREPGGDILIFMTGQDDIEKLVSKLEEKVRSL
AEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSSGMYSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPE
IQRTSLAGSVLYLKSLDLPDIDILKFDFLDAPSSESLEDALKQLYFIDAIDENGAITRIG
RTMSELPLEPSLSRTLIEANENGCLSQALTVVAMLSAETTLLPARSKPSEKKRKHDDDSN
LPNGSGFGDHIQLLQIFESWDRTNYDPAWCKENGMQVRGMVFVKDVRRQLCQIMQKISKD
RLEVGAHGRKSSSRDDYRKLRKALCVGNANQIAERMLRHNGYRTLSFQSQLVQVHPSSVL
SADNDGMLPNYVVYHELISTTRPFMRNVCAVDMSWVAPIKRKIEKLNVRKLSGGPAPSFK
KPEEKMELSKNDAETPAVSENVDSRIEAARERFLARKGQK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcttccgatccttcaatttgaagagaagatcgtggaaacagtggagaagaac
tcagtagtagttataattggagaaaccggttctgggaagagtactcagctctctcagata
cttcatcgacatggttacacaaagtccggcgtcatcgccatcactcagccccgacgtgtg
gctgccgtttccgttgccaggcgagtcgcacaggagcttgatgtaccccttggagaagat
gttggttatgctatacgtttcgaggacagaacttcgaccaaaacacggattaagtacctc
acagatggagttctacttcgtgagagtctgtccaatccaatgcttgatgattattctgta
atcatattggatgaggctcacgagaggagtttaaacacggatattctgttgggtctagtg
aaacggttggttagaatccgtgcatccaactttaaagttcttataacctctgcaacactt
gacggtgaaaaggtttctgaattcttttcgggatgccctgtgctgaatgtacctggaaaa
ttataccctgtggaaatattatacagcaaagagcgtcctgtcagttatattgagtcatct
ctgaaagtagcaattgatatacatgttcgtgagccaggaggtgatatcttaatcttcatg
actggacaggatgatatagaaaaattagtatcaaagctagaggaaaaagtacgaagctta
gcagaaggatcatgtatggatgctattatctatcctcttcacggttctttgccacctgaa
atgcaggttcgtgtatttagtcctcctcctccaaactgccggagatttattgttgctaca
aatattgctgaaacttcccttactgtggacggggttgtgtatgtaattgattccgggtat
gtgaagcaaagacaatataacccatcaagtggaatgtattctcttgatgttattcaaatt
agcaaagtgcaagctaaccaacgtgctggacgtgctggcagaacaagacctgggaaatgt
tatcgtttatacccattggcagtctaccgagatgacttccttgatgcaactattcctgaa
atacaacgaacttctcttgccgggagtgttctatacttgaaatcgttggatcttcctgat
attgacattctcaagttcgattttcttgatgctccttcatctgagtcattagaagatgcg
ttgaagcaattgtatttcattgatgcaattgatgagaatggagcaataacaaggattgga
cggacaatgtctgagcttccactagaaccatcattgtcaagaacattgatagaagcgaat
gaaaacggttgcttatctcaagctctaacagtcgttgctatgctgtcagcagagactact
cttcttcctgctaggagtaaacccagtgaaaagaagaggaagcatgatgatgattctaat
cttcctaatggatccggatttggtgatcacattcaactgctacagattttcgaatcttgg
gaccgtactaattatgatcctgcatggtgcaaagagaacggcatgcaggtgcgagggatg
gtgtttgtcaaagatgttagaagacagttatgtcagattatgcagaaaatatccaaagat
cgattggaagttggggcacatggtaggaagagttcaagccgagacgactacaggaagttg
aggaaagctctatgcgttggtaatgcaaaccaaattgctgagagaatgcttcgtcacaat
ggataccggactcttagtttccagtcccagctagtccaggtgcatccatcatctgtgttg
agtgccgacaacgacggaatgttgccaaattacgtagtgtaccatgagctgatttccacc
acacgtccgttcatgcggaacgtttgtgcagtagacatgtcatgggtggctcccatcaaa
agaaagatcgagaaattaaatgtcagaaaactgagcggtggaccggctccctctttcaag
aaacctgaagagaagatggagttgtctaagaacgatgcagaaacacctgcagtttctgaa
aatgtcgatagtcggattgaagcagccagagaacggtttcttgctcgtaaaggacagaaa
taa
DBGET
integrated database retrieval system
