Arabidopsis lyrata (lyrate rockcress): 110224853
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Entry
110224853 CDS
T01578
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110224853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
110224853
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110224853
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110224853
Complex C
U4/U6.U5 tri-SnRNP related factors
110224853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
AAA_30
nSTAND3
PWI
SRP54
Flavi_DEAD
AAA_16
Cas3-like_C_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110224853
NCBI-ProteinID:
XP_020868029
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MVSNDLKTWVSDKLMVLLGYSQAAVVNYLIAMAKKTKSPTELVGELVDYGFSSSGDTRSF
AEEIFARVPRKSAGVNLYQQHEAEAAMLVRKQKTYALLDADDDEDEVVVEKKSSVSESRK
SDKGKKRFRKKSGQSDESDGEVAVREDSRHVRRKVSEEEDDGSESEEERVRDQKEREELE
QHLKDRDTARTRKLTEQKLSKKEQEEVVRRANALEKDDLYSLRKVSRQEYLKKREQKKLD
ELRDEIEDEQYLFGGEKLTETELREFRYKRELYDLVKKRTQDEDNVEEYRIPDAYDQEGG
VDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKNKQASDDYQFVFE
DQINFIKESVMAGENYEDDMDAKQKSQDLAEKSALEELQEVRRSLPIYTYRDDLLKAVEE
HQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVAQEMGVKLGH
EVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVIVDEAHERTLSTDILFGL
VKDIARFRPDLKLLISSATMDAEKFSDYFDTAPIFSFPGRRYPVEINYTSAPEADYMDAA
IVTVLTIHVREPLGDILVFFTGQEEIETAEEILKHRIRGLGTKIRELIICPIYANLPSEL
QAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPIS
KASATQRAGRAGRTSAGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGIHDL
INFDFMDPPPAEALVKSLELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYK
CSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNYS
TQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEISSNLNELDSVRKSIVAGFFPHTAKL
QKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELAP
HYYQLKDVEDAASKKMPKGAGKAAM
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggtgagcaatgatttaaagacatgggtttcggataagctgatggtgctacttggctat
tctcaagcagctgttgttaactatctcattgcaatggctaaaaaaacaaaatcaccaact
gaacttgtgggagagttggtggattacgggttttcgtcttctggtgatactcgttcgttt
gcggaagaaatttttgccagagttccccgtaaaagtgctggtgtgaatctctaccaacaa
catgaagcagaggcagcgatgctagtgaggaagcagaaaacatatgctcttttagatgct
gatgatgatgaagacgaagtcgttgtggagaaaaaatcttcagtttctgaatctagaaaa
tcagataagggcaagaaaagatttagaaagaaaagtgggcagtcagatgaaagtgatggc
gaggtggccgttagagaggacagtagacacgttagaagaaaggtttctgaagaagaggat
gatggttctgagtcagaagaggaaagagtgcgtgaccaaaaggagagagaagaactggag
cagcatttaaaagatcgtgatactgcacggacacgaaagctaacagagcaaaagttgtca
aagaaagagcaagaagaggttgttcgaagagcaaatgctttggagaaggatgatttatat
tccttaaggaaagtctcgagacaagaatacttgaagaagagagaacagaagaaactggat
gaactaagggatgagatagaagatgaacaatatcttttcggaggtgaaaagctcacagaa
acagagcttcgtgagtttaggtacaagagagagctttatgacctcgtgaagaaaagaaca
caagatgaagataacgtcgaggagtatagaattccagatgcttatgatcaagagggaggt
gttgatcaggagaagaggttttctgttgctgtacaacgatacagggacctggattcaaca
gagaaaatgaatcccttcgcagagcaagaagcttgggaggaccatcagattggaaaagca
acattaaaatttggtgcaaagaataagcaagcctcagacgattatcagtttgtgtttgag
gaccaaataaatttcataaaggaatctgtcatggctggtgaaaattatgaagatgatatg
gatgcaaaacaaaaatctcaagatttggcagagaaatcagctttagaggaacttcaggaa
gtcagaagaagtctgccgatttatacgtatcgtgatgacctgcttaaggctgtggaagag
catcaggttcttgtcattgtgggagatactggttcaggaaagactacacaaataccacaa
tatctccatgaagctggttacacaaagcgtggaaaggttggttgtacgcagccccgaaga
gttgcagctatgagtgttgctgcccgtgtggctcaagagatgggtgtcaaacttggacat
gaggttggctattccattcgatttgaggattgtacttcagataaaacagttctgaagtat
atgactgatggaatgcttttgcgtgagctacttggcgaaccagatctggccagctacagt
gtcgttattgtggatgaggcgcatgaaaggaccttgtcaaccgatatactttttggatta
gttaaggatatagcgcggtttcgacctgatttgaagttgttgatatctagtgcaacaatg
gatgcagaaaaattttctgattattttgacacagccccgatttttagttttcctggaaga
aggtatccagttgaaatcaactatacaagtgcacctgaagctgattacatggacgcagcg
atagttaccgtccttacgatccatgtgagggagccacttggagatatattggtcttcttc
actggtcaagaggaaattgaaactgcagaagagatcttgaagcacaggataaggggttta
ggtacaaagatccgcgaattaatcatatgcccgatttacgcaaatcttccaagcgaactc
caggcaaaaatatttgagccaactccagagggggcacggaaagttgtcctagcaacaaat
atcgctgaaacatcattaaccattgatggtataaagtatgttgttgatccaggctttagc
aaaatgaagtcatacaacccgagaacagggatggaatctttgcttattactcctatctcc
aaggcttctgcaactcaacgagctggtcgagctggaagaacaagtgcagggaagtgttat
cgtctgtacacagcgtttaattataataatgacttggaggaaaacacggtgccagaagta
cagaggacgaatcttgctagtgtggtacttgctttgaagagtcttggaattcatgatctc
ataaactttgatttcatggatcctccacctgctgaagcacttgtgaagtctttagaactg
ctctttgctctgggtgctctaaataagctcggggaattgactaaagctggtagaaggatg
gcagagtttccccttgatcctatgctgtcgaagatgattgttgtttctgacaagtataag
tgctccgatgagataatatcaattgctgctatgttgtcaattggtggctctatcttctac
cgtcctaaggacaaacaggttcatgccgacaatgcaagaatgaatttccacaccggtaat
gtcggtgaccatattgctttgctaaaggtttacagttcatggaaggaaacaaactactct
actcagtggtgctacgagaactacattcaggtccggagcatgaaaagagccagagatatc
cgcgaccaattggagggacttctcgaaagagtggaaatagaaatcagctcaaacctgaat
gaattggattccgttaggaaatccatcgttgccggattttttccgcacactgcaaagcta
cagaagaatggatcatatcgaacagtgaagcatccccagacagtgcacatacatcccaat
tcaggcttatctcaggtattgccgagatgggttgtatatcacgaactagtgcttacttcc
aaggaatacatgcggcaggtaacggagttgaaaccagagtggttgattgagttagctcct
cactactaccagctcaaggacgttgaagatgctgcatcaaagaaaatgcccaaaggagct
ggaaaagctgcaatgtaa
DBGET
integrated database retrieval system
