Arabidopsis lyrata (lyrate rockcress): 110224945
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Entry
110224945 CDS
T01578
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
110224945
03036 Chromosome and associated proteins [BR:
aly03036
]
110224945
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
110224945
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110224945
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
110224945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
Mov-10_helical
Helicase_RecD
DEAD
SLFN-g3_helicase
AAA_16
PhoH
ATPase_2
AAA
Ig_TMEM131L_4
AAA_5
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
110224945
NCBI-ProteinID:
XP_020868613
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MSVSGYKSDDEYSVIADKGEIGFIDYQNDGSAGCYNPFDEGPVVVSVPFPFKNEKPQSVT
VGETSFDSFTVKNTTDEPVDLWTKIYASNPEDSFTLSILKPPSKHSDIKEIQCFYETFTL
EDRMLEPGDTLTIWVSCKPKDIGLHTTVVTVDWGSDRVERVVFLLAEDKISSSLTSNRPY
SRSKRAPKKDFAVDDYVMGSRPSKVVEQRRFKNRLPRYEIPKEIREMIENKQVPDDLNEG
LTARNYANYYKTLLIMEEIQLEEDMRAYDMENVSMRRRGIYLSLEVPGLAERRPSLVHGD
FIFVRHAYDDGTDHAYQGFVHRVEADEVHLKFAPEFHQRHTAGSVYNVRFTYNRINTRRL
YQAVDAAEMLDPNFLFPSLHSGKRMIKTKPFVPISPALNAEQICSIEMVLGCKGAPPYVI
HGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFR
LNAATRAYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHF
THIFLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLER
LFECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPN
KEFPMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQV
MKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRF
NVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEREEFVEEPFNQEGS
SNGPQYPPEAEWNNSGELNNGGANEKGQWSDGWNNNTDTKENNEWSDGWNNNGGGTKKKD
EWSDGWDNSGGTNGINQEGSTNAPQYPQEAEWNDSGEVKNGGTKEKGECSDGWNNNGSTM
EKDVWSDGGNNNGGTQGKEECSDGWKNGGSGEEIKNGGKFETGGDFVAKEEDEWSDGWK
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgagtggatacaaatcggatgacgaatactctgtaatcgcagacaagggagag
attggatttattgactatcagaatgatggatctgctggttgctacaatccatttgatgaa
ggtccagttgttgtttcggttcctttcccttttaagaacgagaagcctcaatcggttact
gttggagagacttcttttgattccttcactgtcaagaacactacggatgagcctgttgat
ctctggactaaaatctatgcatctaaccccgaggattcgtttactctctcgatcttgaaa
ccgccgtcgaaacattctgatattaaagagatacagtgtttttatgaaacttttactctg
gaagacaggatgcttgaacctggtgacactttaactatttgggtttcttgtaagcccaag
gacatcggtttacataccactgttgttactgttgactggggaagtgatagagttgagcgg
gttgttttccttttggctgaggataagatatcgagttctctgacttctaataggccttac
tcaagaagtaagagggctccgaagaaagattttgctgtggatgattatgtcatgggatca
cgaccttcaaaggtggtagaacaacgtaggtttaaaaataggcttcctcggtatgaaatt
ccaaaggagattagagagatgatcgagaataaacaagtccccgatgatttgaacgaaggt
cttacagcaaggaactatgcaaactactataaaactttattgattatggaagaaatacaa
ctcgaggaagacatgcgagcttatgatatggaaaatgtttctatgaggagaaggggtatc
tatttgtctctcgaagttcctggccttgctgagagaagaccttcccttgtccatggagac
ttcatctttgtaagacatgcctatgatgatggaactgaccatgcttatcagggctttgta
caccgcgtagaggcggatgaagtacatttgaagtttgcccctgagttccaccaacgccac
acagctgggagtgtctataatgtgaggttcacatacaatcgaatcaacactagaaggttg
tatcaggctgttgatgcggcagaaatgttggatccaaacttccttttcccatccttgcac
tctgggaaaaggatgataaagacaaaacccttcgtgcccatttcaccagctcttaatgca
gagcagatttgttccattgaaatggttcttggctgcaaaggagcaccaccatatgtaatc
catggacctcctggtactgggaaaaccatgactttggtggaggctatagttcaactttat
acgacacagagaaatgctcgggttcttgtctgtgctccctccaatagtgcagctgatcat
attttagagaagctcctttgtctagaaggagttcgcatcaaggacaatgagattttcagg
ctgaatgcagctactcgcgcatatgaagaaatcaagcctgagattatccgcttttgcttc
tttgatgagttaattttcaagtgcccgcctctcaaagctttgactcgttacaaactcgtt
gtgtcaacttatatgagtgcatcccttcttaacgcagaaggtgtaaatcgtggtcacttc
actcatattttcttagatgaggctggtcaagcttcagagcctgaaaatatgattgctgta
tcaaatctctgccttacagaaactgtggttgtgcttgctggagatccaaggcagttgggt
ccggttatatactcaagagatgctgagtcactaggcttggggaaatcatacttggaaaga
ttgtttgagtgtgactattactgcgaaggggatgagaattatgtaacgaagctagtcaag
aactacagatgccacccagagattcttgatctcccgtcaaagctcttctatgatggagaa
ctggtagcttccaaagaagacacagactctgttcttgcctcgttaaactttcttccgaac
aaagaatttccaatggttttctatgggatccaaggatgcgatgagagggaaggtaacaat
ccgtcctggttcaaccgtatagagatcagcaaagttatagagacaatcaagagattaaca
gcgaatgactgtgtgcaagaagaggatatcggagttataactccttacaggcagcaagta
atgaagatcaaggaggttctggacaggttagatatgactgaagtcaaagttggtagtgta
gagcaattccaaggtcaagagaaacaggtaattatcatttcaactgttagatctactatc
aaacacaatgagttcgatagagcctattgtctgggcttcctgagtaatccaaggaggttt
aatgtcgccataacccgtgcaatctctctgctagtgatcatcggaaacccacatatcata
tgcaaggacatgaactggaacaagcttttgtggcgatgtgtggataacaatgcttaccaa
ggatgcggtttaccagagcgggaggagtttgtggaggaaccattcaatcaagaaggaagc
agcaatgggcctcaataccctccagaagctgagtggaacaacagtggagagctcaacaat
ggtggtgcgaatgagaaaggacaatggtctgatgggtggaacaacaataccgacacaaag
gaaaataatgaatggtctgatggatggaacaacaatggcggtgggacaaagaagaaggat
gaatggtctgatgggtgggacaacagtggcggtacaaatgggatcaatcaagaaggaagc
accaacgctcctcaataccctcaagaagccgagtggaacgatagtggcgaggtcaagaat
ggtggcacaaaggagaaaggtgaatgttctgatgggtggaacaacaatggctccacaatg
gagaaagatgtctggtctgatgggggaaacaacaatggtggaacacagggaaaagaagaa
tgttctgatggttggaaaaacggcggcagtggtgaagagatcaagaatggtggtaaattt
gaaaccggaggtgattttgtagccaaggaagaagatgagtggtctgatgggtggaagtaa
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