Arabidopsis lyrata (lyrate rockcress): 110224952
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Entry
110224952 CDS
T01578
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
110224952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aly03400
]
110224952
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
110224952
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
110224952
DNA repair and recombination proteins [BR:
aly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
110224952
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
COMM_HN
RBR
Ribosomal_S13
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
110224952
NCBI-ProteinID:
XP_020868690
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQISILGKTIVSARRKGK
NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL
SFTDKRRFAKVRLLENPTSVSPISELGPDALLEPMTVEEFAENLAKKKITIKPLLLDQGF
ISGIGNWIADEVLYQARIHPLQSASSLSKEQCEALHTSIKEVIEKAVEVDADSSQFPSNW
IFHDREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLSGKDAEKAAKVRPAKRGVKPKE
DDGEGEEDEQESEKEDESAKTKKGQKPRGGRGKKPASKRKTEDSDDEDDDADGGDDSEAE
EKVVKPRGRGTKPATKRKSEEKATSQAGKKPKGRKS
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcttccagaggtagaggcggcgagaagagcaatagaagaaaattgtcttgga
aagaagattaagcgagtcattatcgccgacgacaacaaagtaatccatggaatctccccg
tctgatttccaaatctcaatcctcggcaaaaccatcgtctctgctcgtagaaagggcaaa
aacctctggctcgagttagattcgccgccatttccttcttttcaatttggtatggctggt
gctatttatatcaaaggcgttgcagttactaagtataagaggtctgctgtaaaggactca
gaggagtggccatctaagtattcaaagttcttcgtcgagcttgatgatggtctggagctt
tcatttactgataagaggagatttgccaaagttcgacttctagaaaatccaacttctgtg
agtccaatatcagagcttggtcctgatgcattgttagagcctatgacagttgaggaattt
gcagaaaacttagctaaaaagaaaataaccataaaacctctcctacttgatcagggtttt
atttcaggtattgggaattggatcgctgatgaagtgctgtaccaagccagaatccacccg
ttgcagtctgcttctagcctctccaaagagcaatgtgaagctttgcacacatccatcaaa
gaggtgatagaaaaagctgtggaagttgatgcagacagtagtcagtttcctagtaactgg
atttttcatgatagggaaaagaagccaggaaaggcctttgttgatgggaagaagattgat
ttcattactgctggtggaaggacaacagcttatgttccagaactgcagaaactttctggg
aaagacgcagagaaagcagccaaggtcagaccggctaaacgaggtgtgaaacccaaagaa
gacgatggagaaggagaagaagatgaacaagaatccgagaaagaagatgagagtgctaaa
acgaagaaaggacagaagcccaggggtggtcgtggtaagaagcctgcctcgaagagaaaa
acagaagatagtgacgatgaggacgatgatgctgatggtggagatgatagcgaggctgaa
gagaaagttgtgaaacccagaggccgtggtacaaagcctgcgacaaagaggaaatctgaa
gagaaagctactagccaagctggtaagaagccaaagggaagaaaaagttga
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integrated database retrieval system
