Arabidopsis lyrata (lyrate rockcress): 110225418
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Entry
110225418 CDS
T01578
Name
(RefSeq) homeobox-leucine zipper protein HDG2 isoform X1
KO
K09338
homeobox-leucine zipper protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aly03000
]
110225418
Transcription factors [BR:
aly03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
110225418
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
TUSC1
DciA_cyano_C
Motif
Other DBs
NCBI-GeneID:
110225418
NCBI-ProteinID:
XP_020870784
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MFEPNMLLAAMNNADSNNHNYNQEDNNNEGFLRDDEFDSPNTKSGSENQEGGSGNDQDPL
HPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMK
NHHERHENSHLRAENEKLRNDNLRYREALANASCPNCGGPTAIGEMSFDEHQLRLENARL
REEIDRISAIAAKYVGKPVSNYPLMSPPPLPPRPLELAMGNLGGEAYGNNPTDLLKSITA
PTESDKPVIIDLAVAAVEELVRMVQVDEPLWKSLVLDEEEYARTFPRGIGPRPAGYRSEA
SRESAVVIMNHVNIVEILMDVNQWSTIFAGMVSRAITLAVLSTGVAGNYNGALQVMTAEF
QVPSPLVPTRETYFARYCKQQGDGSWAVVDISLDSLQPNPPARCRRRASGCLIQEMPNGY
SKVTWVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCERLASVMATNISSGEVG
VITNQEGRRSMLKLAERMVISFCAGVSASTAHTWTTLSGTGAEDVRVMTRKSVDDPGRPP
GIVLSAATSFWIPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLL
RVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNIVLNGGDPDYVALLPSGFAILP
DGNANSGAPGGDGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASMSCET
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagccaaatatgttgcttgcggctatgaacaacgcagatagcaataatcacaac
tacaaccaagaagacaacaacaatgaaggatttcttcgggacgatgaattcgacagtccc
aatactaaatcgggaagtgagaatcaagaaggaggatcaggaaacgatcaagatcctctt
catcctaacaagaagaaacgatatcatcgacacacccaacttcagatccaggagatggaa
gcattcttcaaagagtgtcctcacccagatgacaagcaaaggaaacaactaagccgtgaa
ttgggtttggaacctcttcaggtcaaattctggttccaaaacaagcgcacccaaatgaag
aatcatcacgagaggcacgagaactcgcatcttcgggcggagaacgaaaagcttcgaaat
gacaacttaagatatcgagaggctcttgcaaatgcttcgtgtcctaactgtggtggtcca
acggctatcggagaaatgtccttcgacgaacaccaactccgtctcgaaaatgctcgatta
agggaagagatcgaccgtatatccgcgattgcagccaaatatgtaggcaagccagtttca
aactatccacttatgtctcctcctcctcttcctccacgtcctctagaacttgccatggga
aatcttggtggagaagcttatggaaacaatccaaccgatctccttaagtccatcactgca
cctacagaatctgataaaccggtcatcatcgacttagccgtggctgcagtggaagagctc
gtgaggatggttcaagtggacgagcctctgtggaagagtttggttttagatgaagaagag
tatgcacggacgtttcctagagggatcggacctagaccggctggatatagatccgaagct
tcgcgagaaagcgcggttgtaatcatgaatcatgttaacatcgttgagattctcatggat
gtgaatcaatggtcgacgattttcgccgggatggtttctagagcgataacattagcggtt
ttatcgacaggagttgcaggaaactataatggagctcttcaagtgatgactgcagagttt
caagttccatctccattagtcccgacccgtgaaacctatttcgcacgttactgtaaacaa
caaggagatggttcgtgggcggttgtcgatatttctttggatagtctccagccaaatccc
ccagctagatgcaggcggcgagcttcaggatgtttgattcaagaaatgccaaatggatat
tctaaggtgacttgggtggagcatgtggaagttgatgacagaggggttcataacttatac
aaacacatggttagtactggtcatgcctttggtgctaaacgctgggtagcgattcttgac
cgccaatgcgagcggttagctagtgtcatggctacaaacatttcgtctggagaagttggc
gttataactaaccaagaagggaggaggagtatgctgaaattggcggagcggatggttata
agcttctgtgcaggagtgagtgcttcaaccgctcatacgtggactacactgtccggtaca
ggagctgaagatgttagagtgatgactaggaagagtgtggatgatccaggaaggcctccg
ggtattgttctcagtgcagccacttccttttggatccctgttcctccaaagcgagtcttt
gacttcctcagagatgagaattcaagaaatgagtgggatattctgtctaatggaggagtt
gtgcaagaaatggcacatattgctaacgggagggataccgggaactgtgtttctcttctt
cgggtaaatagtgcaaattcaagccagagcaatatgctgattctacaagagagctgcact
gaccctacagcttcctttgtgatctatgctccagtcgatattgtagcgatgaatatagtg
cttaatggaggtgatccggactatgtggctctgcttccgtcaggttttgctattcttcct
gatggtaatgccaatagtggagcccctggtggagatggagggtcactcttgaccgttgct
tttcagattctggttgactcagttcctacggctaagctgtctcttggctctgttgcaact
gtcaacaatctaatagcttgcactgttgagagaatcaaagcttccatgtcttgtgagact
gcttga
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