Arabidopsis lyrata (lyrate rockcress): 110226148
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Entry
110226148 CDS
T01578
Name
(RefSeq) homeobox-leucine zipper protein HDG4
KO
K09338
homeobox-leucine zipper protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aly03000
]
110226148
Transcription factors [BR:
aly03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
110226148
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
HTH_Mga
TPR_ESP1
Yippee-Mis18
DUF5811
Motif
Other DBs
NCBI-GeneID:
110226148
NCBI-ProteinID:
XP_020872468
LinkDB
All DBs
Position
Unknown
AA seq
727 aa
AA seq
DB search
METKVEKKMYGDYQEMKSGEEEEGHVFLNSDNIFGSVSSSPTTTIQNPNYKFTSFDNPNF
PYIFPKEEYEMTSMIESGSGMSTWSGHDPVENTAIEKEPPPAKKKRNHRHTARQIQLMEA
LFKENPHLDDEKRLRLSKELDLSPLQVKFWFQNKRTQIKAQQTRRDNVMMKAENETLKTE
SQNLQSSLQCLSCSSCGHNLRLENARLRGELDRLRSIVSMRNPPPAQEIAGFIPETNNIN
NNMLIAEEEKTIAMELAVSCAQELAKMCGINEPLWSKKRLYNDSVCLNEEEYKKMFFWPP
MTDDDRFRREASRANAVIMMNCINLVKAFLDADKWSEMFCPIVSSAKTIQIISSGASGPS
GTLLLMFAELQVVSSLVPTREAYFLRYVEQNAEEGKWMIVDFPIDRIKPASATLTDQYRR
KPSGCIIQAMRNGYSQVTWVEHVEVEEKLVQDEMVREYVKSGVAFGAERWLAVLKRQCER
MASFMATNITDLGVIPSVEARKNLMNLSQRMVRTFCLNISNSYGQASTKDTVRIVTRKVC
GGLVPCAVSVTLLPYSHHQVFDLLRDNQRLSQLEILFNRSSFQEVAHIANGSHPGNCISL
LQINVENNSSQNVELMLQETCTDNSGSLLVYSTVEPDAVQLAMMNGEDPFKLPLLPVGFS
VVPVNPSDGVEGISVNLPSCFLTVAIQVLGSNVTTAKLDLSTVSAINNRICATVNRITSA
LVNDVGN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgaaagtcgaaaaaaaaatgtacggagattatcaagagatgaaatcaggcgaa
gaagaagaaggacatgtgtttttaaattccgacaacattttcggttcggtgtcttcgtct
ccgacaacaacaatccaaaaccctaactacaaattcacctccttcgacaacccaaatttc
ccttacatttttccgaaagaggagtatgagatgacgagcatgatcgaaagcgggtcgggt
atgtcaacttggtcgggtcatgacccggtggagaatactgcaatcgagaaagagcctcct
ccggcgaagaagaaacgtaaccatagacacactgctcgtcagattcaactaatggaagca
ttgtttaaggaaaatcctcatctggatgacgaaaaaagattgagattaagtaaagaactt
gatctctcgccactacaagtcaagttttggtttcagaataaacgtacccaaatcaaggca
caacaaacaagaagagataatgtaatgatgaaagcagagaatgagactctaaagacagag
agtcagaatcttcagtccagtttacaatgcctctcttgctcttcttgtggacacaacctc
cgcctcgaaaacgcccgcctccgcggagagcttgatcgcttacgcagcattgtttccatg
aggaatcctcctcctgcacaagagattgccggtttcatcccggagactaataacatcaac
aataacatgttgattgcggaagaagaaaagacgattgcgatggaacttgcggtttcttgt
gctcaagaattagcaaagatgtgtggcataaatgagcccttgtggagtaagaagagacta
tacaatgatagtgtgtgtctgaacgaggaagagtataagaagatgttcttctggcctcca
atgactgatgatgatcgttttcgcagagaagcttcaagagctaatgcagtcatcatgatg
aactgcattaacctcgtcaaagcattccttgatgctgataaatggtcagaaatgttctgc
ccgatagtctcaagcgccaagacgattcagatcatttcttctggagcctctggaccaagt
ggtactcttcttctgatgtttgcagagttacaagtagtgtcttcattggtgccaacacga
gaagcttattttcttcggtatgtggagcaaaatgcggaagaaggaaaatggatgattgta
gatttccccatcgataggatcaaaccagcatcagctactcttactgatcaataccggaga
aaaccttctggttgcatcattcaagcaatgcgtaacggatactctcaggtcacatgggta
gagcacgtggaagtagaagagaagctagtgcaggacgagatggttagagagtatgtgaag
agcggtgtggcctttggcgctgaacggtggctagctgtgttaaagagacagtgtgaaagg
atggctagtttcatggctacaaacatcactgaccttggagtgataccttctgtagaagca
aggaagaacttgatgaatctgtcacagagaatggttagaactttctgtctgaacataagc
aattcatatggacaagcatcaacaaaggacacagtgaggatcgtaaccaggaaagtttgt
ggtggtcttgttccgtgtgccgtgtcagtcacgcttcttccttattctcatcaccaagtt
tttgatcttctccgcgataatcaacgtctctctcagctggagatcttgttcaatagaagt
tcatttcaagaagttgctcatatcgctaatggatcacatcctggaaattgcatctctctt
cttcagatcaatgtggagaacaattcatcgcaaaatgtagagttgatgcttcaagaaact
tgcaccgataactccggcagtctcctggtgtactccactgtcgaacccgacgccgttcaa
cttgctatgatgaacggcgaggatccttttaaactccctcttttgcccgttggattctct
gttgttccagtgaatccatccgatggcgtcgagggcatttccgtcaatttaccttcgtgt
tttctcacagttgcgatacaggtcttggggagcaacgtcaccaccgcaaaactcgatctt
tccaccgtctccgccatcaacaaccgtatttgcgccactgtcaatcgtatcacttccgcg
ctcgtcaacgacgttggtaattag
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