Arabidopsis lyrata (lyrate rockcress): 110226306
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Entry
110226306 CDS
T01578
Name
(RefSeq) polyadenylate-binding protein RBP45A-like
KO
K13126
polyadenylate-binding protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110226306
09123 Folding, sorting and degradation
03018 RNA degradation
110226306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
110226306
03041 Spliceosome [BR:
aly03041
]
110226306
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110226306
mRNA cycle factors
Stress granule specific factors
110226306
Spliceosome [BR:
aly03041
]
Complex C
Other components
Complex C specific factors
110226306
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_occluded
RRM_Nup35
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
110226306
NCBI-ProteinID:
XP_020873037
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MAHIPHKAKISDIVDFFKDVGEVVHVRLAIKRDGGRTGSGFVEFASANETKKALEKKNGE
YLLHRKIILNVAKIASSLPLPKHCIDHKVWYEDCLRRGEDETPPDFAEEVLFVANLSPQT
KILDIFDFCKDVGEVVSVRLIANHEGKHVGCAFVEFLSANEANKVLEKKNGEYLHNHKIF
LMKGHGETPDFAEAVATRKTKTLFVAHLAPQTIISDIINFFKDVGQVVHVRLIVNHNGKH
VGWGFVEFASNDEAEKALEKKNGEYLQDGKIFLEAAKIAPFPPPKWCIDHKVWYEDYLRQ
ESLQIDEDGAVEGLAETPYFVEEARKKTLFVANLPPQTNIPKIMYFFKDVGEVVRVRLIV
DHRGKHVGCGYFEFASANEAEKALEQKNGKSLRYHHIFLDVAEIAPYPLQPKYNLVEKLW
YEDNLLREPNLKQQKEKSDGFCGKKTTFSSRDDC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcccatatccctcacaaagctaaaatatcagatatcgtcgatttctttaaagatgtt
ggagaagttgttcatgttcgacttgctataaaacgagatggtgggcgtactggctctggc
tttgttgaatttgcttctgccaatgaaacaaaaaaggcactggaaaagaagaatggtgaa
tatttgctccatcgcaagataattctcaatgttgctaagatagcttcttcattgcctctt
cctaagcattgcatagatcacaaggtttggtacgaagactgccttcgacgaggagaagat
gagacacctcccgatttcgctgaggaagttctctttgttgccaatctctctccccaaact
aagatattagatatcttcgatttctgcaaagatgttggagaagttgtcagtgttcgactt
attgcaaaccatgagggcaagcatgtgggctgtgcctttgttgagtttctttctgctaac
gaagcaaataaggtgctggaaaagaagaatggtgaatatttgcacaatcataagatcttt
ttgatgaaaggacatggtgaaactcccgattttgctgaggctgttgccacaagaaaaaca
aagacgctctttgttgcccatcttgctccccaaactataatatcagatatcatcaatttc
ttcaaagatgttggacaagttgttcatgttcgacttattgtcaaccacaatggcaagcat
gtgggctggggatttgttgagtttgcttctaatgacgaagcagagaaggcgctggagaag
aagaacggtgaatatttgcaggatggcaagatttttcttgaagcggctaagatagctcca
ttccctccacccaagtggtgcatagatcacaaggtttggtacgaagactaccttcgacaa
gaaagccttcagatagatgaagatggggcagtggaaggacttgctgaaactccctatttc
gttgaggaagcaagaaaaaagacactctttgttgccaatctccctcctcaaactaatata
ccaaagatcatgtatttcttcaaagatgttggagaagttgttcgtgttcgacttattgtt
gaccataggggtaagcatgtgggctgtggctattttgagtttgcttctgctaatgaagca
gagaaggctctggaacagaagaatggtaaaagtttgcgctatcatcatatctttcttgac
gtggctgagatagctccataccctctccaacccaagtacaaccttgtagagaagctttgg
tacgaagacaaccttctacgagaaccgaatctgaagcaacagaaggaaaaatccgacgga
ttctgcggtaagaagactaccttctcttccagggacgactgctag
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