Arabidopsis lyrata (lyrate rockcress): 110226490
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Entry
110226490 CDS
T01578
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110226490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
110226490
04121 Ubiquitin system [BR:
aly04121
]
110226490
03036 Chromosome and associated proteins [BR:
aly03036
]
110226490
03400 DNA repair and recombination proteins [BR:
aly03400
]
110226490
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110226490
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
110226490
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
110226490
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
110226490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-HC5HC2H_2
zf-C3HC4
RTT107_BRCT_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
zf-RING_5
zf-RING_10
PTCB-BRCT
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
110226490
NCBI-ProteinID:
XP_020874073
LinkDB
All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MADTSHLERMGRELKCPICLSLFNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRR
EIRGAPHMDSLVSIYKNMEDASGVNLFVSQNDPSSLVKEKHVRDASIEKASDKNRQGSRK
GRTSKRKEYGKTKETDVDAHGPIVMKPSSQTKKRVQLLHNLSSESLTKPTESAENPKHYT
ENTVIRLDEHPGLNKEGNLSPFFWLRDEDDGENSSQRTESDQLLDAKPVDVPSFSDLMDS
DHESPSKADEQEKPNPGDMFDSEMFEWTQRPCSPEILPSPMKAKVLGRGDIDLTQKKLSK
VASSKCKNRKAGSARNKVARRSVEVSKEDNMESSAVANISEKQDSRGTSGIIIRNDGNPD
ENVKTKRATRSKGQSSRVQSDLNVSKEADGKQGTKRKRSSIKSSPAHPITGSNELSLGTE
IVGKGDQDRAHGPSDTDPEKQSPTEKPSLKKRGRKSNASSSLKDLSGKTQKKTSEKRLKL
DSHLTSSKATQSHGNGILTDELNQVSDKHDSTNKKKSTVGKENHTMQVLEKCSAINKSSS
GGSAHLRRCDGPSTKIFTCAFCQSSEDTEASGEMAHYNRGEPVSADFNGGSKVIHVHKNC
AEWAPNVYFNNLTVVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLMPE
CRWDNENFVMLCPLDASIKLPCEETNSKDRKCKRTPKGPLHSQPNQVSGKTSIAELQSKQ
FHGLSKKLVLSCSGLTVEEKTVITEFEELTGVTISKNWEPTVTHVIASINENGACKRTLK
FMMAILEGKWILTIDWIKACMKNTKYVSEEPYEITMDVHGVREGPYVGRQRALKKKPKLF
NGLKFYIMGDFELAYKGYLQDLIVAAGGTILRRRPVSSDDNEASTIVVFSVEPSKKKTLT
QRRSDAEALAKSARARAASSSWVLDSIAGCQILDLI
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggacacaagtcacctggagaggatgggaagagaactcaagtgccctatttgcttg
agtctatttaattctgcagtttcactttcgtgtaaccatgtcttttgcaatgcgtgtata
gtgaaatcgatgaaaatggatgctacttgtcctgtttgtaaaatcccttaccatcgtaga
gagattcgaggtgcccctcatatggacagcttggtgagcatctacaagaacatggaagat
gcttctggggttaacttatttgtaagccagaatgatccatcatcattagttaaagaaaag
catgtgagagatgcttccattgaaaaggcaagtgataagaatcgtcagggatctaggaaa
ggtcgaacatccaagaggaaagagtatgggaaaaccaaggaaacagatgtagatgcacat
gggcctattgttatgaaaccttcatcccaaaccaagaaaagggtgcagctgctccataat
ctgtcttctgaaagtttaactaaacctaccgagtcagctgaaaaccccaagcactacact
gaaaacactgtgattcgtttggatgagcatcctggtctgaataaagaaggaaatctgtca
cccttcttttggttgagagatgaagatgatggggagaactcaagtcagcgcacagaaagt
gatcaacttttagatgctaaacctgttgatgttccctctttcagcgatttgatggactca
gatcatgagagcccatcgaaggcagatgagcaagaaaagcctaatccaggggatatgttt
gacagcgaaatgtttgaatggactcagaggccttgttctccggagattctacctagtcct
atgaaggccaaggtcctaggtagaggtgatattgatcttactcaaaagaaactatctaaa
gtagcatcatccaaatgtaaaaaccgcaaagcaggaagtgcaagaaataaagttgctaga
cgaagtgttgaggtttcaaaggaggacaacatggaatcatctgcagtagcaaacattagt
gagaaacaagatagtcgtgggacttctggcataattatcaggaatgatgggaatcctgat
gaaaatgtgaaaactaaaagggctacaagaagcaagggtcagagttcacgagttcagtct
gatctaaatgtatccaaggaagcagatggaaagcaggggacaaagaggaaaagatctagc
attaaatcctctccagctcacccgatcacaggatctaatgagctctcacttggaacagaa
attgtgggaaagggggatcaggatcgagcccatgggccatctgatacagatcctgaaaaa
caaagtcccaccgagaaaccctctctgaagaagaggggaagaaaatccaatgcaagctcc
tctttaaaagatctatctgggaaaactcaaaagaagacttctgaaaagagattgaaactt
gattcccatttgacctcaagcaaagctacacaatcgcatggaaatggtatcctaactgat
gagttgaatcaagtgagtgataaacacgattcaacaaacaaaaagaaatccactgtgggt
aaagaaaatcataccatgcaagtgttggagaaatgctcagcgataaacaagtcttcatct
ggaggtagtgcacatttgcgacgatgtgatggaccttcaacgaagatattcacatgtgcc
ttttgtcagtcttcagaagacacagaggcttcaggagaaatggctcactacaacagaggt
gaacctgtctctgcagattttaatggggggtctaaggtcatacatgttcacaaaaactgt
gctgaatgggctccaaatgtatacttcaacaaccttaccgtagtgaatcttgatgtggag
ttgacaagaagccggagaataagttgcagctgctgtggccttaaaggcgcagcacttggt
tgttacaataagagttgcaagaatagttttcatgttacgtgtgcaaaactcatgccagaa
tgcagatgggacaatgaaaactttgtaatgctatgccctttggatgcatccattaagttg
ccctgtgaagagactaattcaaaagacaggaaatgcaagcgtactcctaaaggaccactg
cactctcagcctaaccaagtgtctggaaaaacaagcatcgctgagctccagagcaagcag
ttccatggattgtccaagaaattggtcttatcctgctcagggctcacagttgaagagaag
actgttattacagaatttgaggaactcactggagttacgatctcaaagaattgggagcca
actgttacacatgtcattgcatcaatcaatgaaaacggagcctgcaaaaggaccctcaaa
ttcatgatggcaatcttggaggggaaatggatactaaccattgattggattaaggcgtgt
atgaaaaatacaaaatatgtaagcgaggagccatatgagattaccatggatgttcatgga
gtacgagaaggaccttatgttggaagacaaagagctttgaaaaagaaaccaaaacttttt
aatggactaaagttttacattatgggagatttcgagcttgcttacaaaggatatcttcaa
gatctgattgtagcagcaggaggaacaatcttgcgtaggcggcctgtttcttctgatgat
aatgaagcttcaacgatcgtagtatttagtgttgagcctagcaagaagaaaactctgacc
caaagaagatctgatgctgaagccttggccaaatctgctagagccagagctgcaagcagt
tcatgggttttggattctattgcaggttgccaaattttagacttgatataa
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