Arabidopsis lyrata (lyrate rockcress): 110228145
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Entry
110228145 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: RAB6A-GEF complex partner protein 1-like
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
110228145
Membrane trafficking [BR:
aly04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
110228145
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Dynamin_M
Beta-prop_THOC3
Beta-prop_RIG_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_VPS8
Beta-prop_WDR36-Utp21_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WDR55
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR3_1st
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
110228145
NCBI-ProteinID:
XP_020880137
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MYMAYGWPQVIPLLEGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRD
DRSVREEGENLQAVWSPDSKLIALLTSSFFLHIYKIKFTDKRVKPGERQPSELSFATISL
LLSEQVPFAGKDLSVSNFVRDSKTMLLGLSDGCLYSISWKGEFGGAFSIGSHPSDSNDDR
LLSYSLGNGLVSGVASAALASDDEFSTKSAIVQLELCTRSKLLFVLNSDGQLVVCSVNKK
GLKYTESIKAEKKLGGDAVCASVASEQQILAVGTRKGMVELYDLSQSISLLRTVSLHDWG
YSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLSSTSSPKINPK
QDSKYEPLMNGTSAIQWDEYGYRLFATEEASSDRILAFSFGKCCLNRGVSGKTYVRQVMY
GDDRLLMVQAEDTDELKLLHLKLPVSYITQNWPVQHVAASEDWKYLAVAGLHGLILYDVR
FKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETYELLFYPRYHLDLSSLLCRXV
LLGKPMVMDVYQDYILVSYLPFVIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSHP
AAMFFVPDLHPREGELDNDNLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDSVE
LFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSLGDDPFMQEDFLQLDPELEFDREVY
PLGLLPNVGVVVGVSQRMSFSASAEFPCFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQ
LSAEKPHFFHCLEWLLFTVFDAEISKYPMLSIFIKPNPNRNQISGPGHLKKLSLLRKACD
LIKNFPEYYDVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILVIAKL
EGVAVSQYCALRLLQATLDESLYDLAGELVRFLLRSGRDIEQAPTESDSLSPKLLGFLIF
CSSHKKSSLDKSSSFKEQSPHVASVKSILESHVSYLMSGKELSKLVAFFKGTQFDIVDFL
QRERYGCAQLQNFAAGLELIGEKLQMSELQNRLDAEFLLAQMCSVKFEEWIVVLATLLQR
SEVLYDIFRYDLRLWKAYSLTLEILEGRGYRLRYPWVGVVNRSQADINKSVDMIAARRPE
RDYFQTSPEYSELTEGVQSI
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcttacggatggccgcaggtgatcccgcttctagaaggatcgtgtccgtct
tctcagcgagtcgtgtaccttaagctcgccggccggctattgctggttgtttctccgtct
cacttggagctttggggttcttctcagcaacgagtgaggttgggaaagtatatgagagat
gacaggtcggtgcgagaagaaggagagaatttgcaagctgtgtggagtccagactccaaa
ttgattgctcttcttacatcatcattcttccttcatatatataaaattaagtttactgat
aaacgagtaaaacccggagagagacaaccctcggagttgtcttttgcgaccatatctctt
ttgctaagtgagcaggtcccttttgctgggaaggacttgtctgtgagcaattttgtgagg
gacagcaaaactatgcttttgggactttctgatggatgtttatatagtatttcctggaaa
ggagagtttggtggagctttcagtattggctcccacccttctgatagcaacgatgataga
ctcttgtcctactctcttggtaatgggctagtctctggagtagcttcagcagcacttgca
tctgatgatgaattctcaacaaaatcggctattgttcagctggaactctgcactcgctcg
aagttattgtttgtgttaaattctgatgggcagctagtagtatgctctgtgaataagaaa
ggtttaaagtacactgagagcattaaagctgagaagaagttgggtggtgatgctgtttgt
gcatcagtggcttcagagcaacaaattcttgctgtgggtacaagaaaagggatggtggaa
ttatacgatctgtcacaatcgatctctctcttacgaacagtttctttgcatgactggggt
tattcagcggattacactgggcctgtcaataacattgcatggacgcctgataattctgct
tttgcagttgggtggaagtcgagaggacttgcagtttggtctgtttctggatgtcgattg
atgtcaactgtccgccaaattggattgagttctacatcttcccctaaaattaatccaaaa
caagacagtaaatacgaaccactgatgaatggtacttcagccatccagtgggatgaatat
ggatatagactatttgctacagaggaggcatcaagtgatagaattcttgcattttctttt
gggaaatgttgcttaaatagaggagtttcaggaaaaacttatgttcgtcaggtaatgtat
ggtgatgatagactactgatggttcaggcggaggacactgacgagcttaagcttttacat
ctaaaacttccagtttcttatattacccaaaattggcctgttcaacatgtggcagctagc
gaggattggaaatacttggcggttgctggtttacatggcctgattttgtatgacgttagg
tttaagaagtggagggtatttggagatgtcagtcaagaacaacagattcattgcaagggt
ttgttatggttggggaagatagtcgtaatctgtaactacatcgaagcttctgagacatat
gaactgcttttctatccaagatatcaccttgatctgagctctttactttgtcgttaagtg
ctgcttggcaaaccaatggtgatggatgtgtaccaggattatatacttgtatcttatctt
ccgtttgtcatccatgtttaccatgtgaagatatatggcgaattgacaccttcaagcaaa
gcagatctacagctttccacagtaagagagttgtcaatcatgactgcaaagagccatcca
gcagcaatgttctttgttcctgacctgcacccgagagaaggcgagttggataatgataat
ttgtcttctgatttgtcagacagggaaccctcaagatgtcttatactgaggggaaatggg
gagctttcacttcttgatttggttgatggacgagagagggaacttacagactcagttgaa
ctgttttgggtgacatgtggtcaatcagaggagaagacaaatcttgttgaggaagtatct
tggctagattatgggcaccgaggaatgcaggtttggtatccttctctaggggatgatccc
tttatgcaagaggatttcctgcagttggatccagagttggaatttgatcgtgaggtgtat
cccttgggacttttaccaaatgtgggtgtcgttgtcggagtttctcagagaatgtcattt
tcggctagcgcagagtttccttgttttgagcctacaccccaggctcagactatactacat
tgcctgctccgccacctccttcagagagataaaaatgaagaggcgttactcttagcacaa
ttatcggcagagaaacctcactttttccattgtctggagtggcttctttttactgttttt
gatgcagagatttctaagtatccaatgctatcaatctttataaagccaaatccaaacagg
aaccagatttcaggacctgggcatcttaaaaagttatcccttttgagaaaagcctgtgat
ttaataaagaatttcccggagtactatgatgtggttgtgaatgtagccagaaaaaccgat
gcccgtcactgggctgatttattttctgctgctgggatttcaacaacgttgtttgaggac
tgcttccagcgaagatggtatcgaaccgcagcttgctatatacttgtgattgccaaacta
gaaggtgttgctgtcagtcagtactgtgcattacggctattgcaggcgacacttgatgag
tccctctatgatcttgctggagagctagtgaggttcttactaagatctggaagagacatt
gagcaggcgccaacagaatcagattcattatcacctaagcttctcgggtttcttattttc
tgctccagccacaagaaatcatcactcgataagagctcttctttcaaagagcaaagtcct
catgttgcttctgttaagagcatacttgaaagtcatgtcagttacttgatgtctggtaaa
gaactttcaaagcttgttgcattcttcaaaggcacccagtttgatattgtggattttctt
caacgagaaagatatggttgtgcacagctgcaaaattttgctgcaggacttgaactgatt
ggggaaaagctgcaaatgagtgagctacagaacaggttagatgcagagtttctattggcg
cagatgtgttctgtcaaattcgaagaatggatagttgttcttgccactcttttacaacgg
tctgaggttctttatgatattttccggtatgatctacggttgtggaaagcatatagcctg
actttagagatacttgaaggaaggggatacagattaaggtatccttgggttggtgttgta
aaccggtctcaagctgacattaataaaagtgttgatatgatagctgctcgtcgacctgaa
cgtgattacttccagacttccccagaatactctgaactgacagaaggggttcagagtatt
tag
DBGET
integrated database retrieval system
