Arabidopsis lyrata (lyrate rockcress): 110228350
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Entry
110228350 CDS
T01578
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
110228350
03012 Translation factors [BR:
aly03012
]
110228350
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110228350
5.6.2.5 RNA 5'-3' helicase
110228350
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Other ribosome biogenesis factors
110228350
Translation factors [BR:
aly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110228350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
AAA_19
Viral_helicase1
DEAD
AAA_22
AAA
ResIII
nSTAND3
UvrD-helicase
AAA_16
AAA_25
RuvB_N
PhoH
PIF1
AAA_33
SRP54
AAA_7
Zot
NPHP3_N
SLFN-g3_helicase
IstB_IS21
DUF2786
TsaE
PspAA
Motif
Other DBs
NCBI-GeneID:
110228350
NCBI-ProteinID:
XP_020881183
LinkDB
All DBs
Position
Unknown
AA seq
643 aa
AA seq
DB search
MSKKQGSAMSLEAFVSTMAPLIDMEKEAEISMSLSTGASRNIETAQKKGTTILNLKCVDV
QAGLMGKSLIEFQSNKGDVLPAHKFGNHDVVVLKLNKSDLGSSPLAQGVVYRLKDSSITV
VFDEIPEEGLNTSLRLEKLANEVTYRRMKDTLIQLSKGVLRGPASDLVPVLFGERQPSVS
KKAVKSFTPFNKNLDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKI
LTCAASNIAVDNIVERLVPHKVKLVRVGHPARLLPQVLDSALDAQVLKGDNSGLANDIRK
EMKALNGKLLKAKDKNTRREIQKELRTLGKEERKRQQLSVSDVIKNSDVILTTLTGALTR
KLDNRTFDLVIIDEGAQALEVACWIALLKGSRCILAGDHLQLPPTIQSAEAERKGLGRTL
FERLADLYGDEIKSMLTVQYRMHELIMNWSSKELYDNKITAHSSVASHMLFDLENVTKSS
STEATLLLVDTAGCDMEEKKDEEESTYNEGEAGVAMAHAKRLMESGVQPSDIGIITPYAA
QVMLLRILRGKEEKLKDMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAV
TRSRRQCCIVCDTETVSSDAFLKRMIEYFEEHGEYLSASEYTN
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaagcaaggatctgcgatgtctcttgaagcttttgtgtcaacaatggctcca
cttatagatatggagaaagaagctgagatctcaatgtctttaagcactggtgcttcaagg
aacattgaaactgctcagaagaaaggcacaacgattctcaatttgaaatgtgttgatgtt
caagcaggtctcatgggcaaatctcttattgagtttcaatctaacaaaggagatgttctt
cctgctcacaagtttggtaaccatgatgttgttgtgttgaaacttaacaaatctgatctt
ggttcgtctcctcttgcacaaggagttgtttaccggttgaaagattcttcgattactgtt
gtgtttgatgagatccctgaagaagggttaaacacttctcttcggttggagaaacttgcg
aatgaggtgacgtaccgtaggatgaaagatacgttgatacagctgagtaaaggtgtgtta
agaggacctgcttctgatttagtgcctgtcttgtttggtgagagacaaccatcagtgtcg
aagaaggctgttaagtcctttacgccttttaacaagaaccttgatcaatcgcagaaagat
gcgattacaaaggctttatcttcaaaggatgtgtttttgctacatggtcctcctggtact
gggaagacaacgacagtggtggaaatagtcttgcaagaagttaaacgcggttcaaagatt
cttacttgtgctgcttcgaatattgcagttgataatattgttgaaagacttgttcctcat
aaagttaagctggtgagggtgggacatcctgctcggcttttacctcaagtgttggatagt
gctctagatgctcaggttctaaagggagataacagcggtctagcaaatgatatcagaaag
gaaatgaaagcactaaatgggaagttgttgaaagcgaaagataaaaacacaaggagagaa
atccagaaggagcttcgaactctaggtaaggaagagcgtaaaaggcagcaattatctgta
tcagatgtgatcaagaattctgatgtcattctcacaactttgactggtgcattaacacga
aagctcgataatagaacttttgacttggtgatcattgatgaaggagcacaggctcttgag
gtagcatgctggatagctctgctaaaggggtcaagatgtatacttgcaggagaccatctc
caactcccaccgacaatccaaagtgctgaagctgaaaggaaaggattagggagaacactc
tttgaacggctagcggatctttatggagatgagatcaagtccatgcttactgtccagtat
cgtatgcatgagcttataatgaactggtcatcaaaagagctttacgataacaagataaca
gcgcattcaagtgttgcctcacacatgctttttgacttggagaatgtaacaaaatcttct
tcaacagaggcgactctactattagtagatactgctgggtgtgacatggaagagaagaaa
gatgaggaagagagcacctataacgaaggtgaagcaggggttgcaatggcacatgccaag
agactaatggagagtggagttcagccttctgatattggaattattacgccttacgctgct
caggttatgctgcttaggattcttaggggcaaagaggagaagcttaaggacatggagatc
tctacggtggatggtttccaaggtcgagagaaagaagcaatcatcatttccatggttcga
tcaaactcgaagaaagaggttggatttttaaaggaccaaaggcgaatgaatgtggctgtt
actcgctctagaagacagtgttgtatcgtctgcgatacagagacagtgagcagtgatgcg
tttctgaaacgtatgattgaatactttgaggagcatggcgagtatctcagtgcctctgag
tacaccaactag
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