Arabidopsis lyrata (lyrate rockcress): 110228606
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Entry
110228606 CDS
T01578
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110228606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
110228606
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110228606
Spliceosome [BR:
aly03041
]
Complex C
Other components
Step II factors
110228606
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
TsaE
AAA_16
Sigma54_activ_2
ABC_tran
PhoH
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
110228606
NCBI-ProteinID:
XP_020882015
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MEKEELNKLNHLSLVSNVCNELETHLGSAEKVLAEFIIDLGRHSETVDEFDKKLKEEGAE
MPDYFVRSLLTTIHGIYPPKPKSEKKKEEGDDQKFKGLAIKDTKDKVKELEKEIEREAEE
RRREEDRNRDRDRRDSGRDRDRDRNRDDRRDRHRDRERNRGDDEGEDRRSDRRHRERARG
GDDEGEDRRRDRRAKDEYVEEDRGGANEPELYQVYKGRVTRVMDAGCFVQFDKFRGKEGL
VHVSQMATRRVDKAKEFVKRDMEVYVKVISISNDKYSLSMRDVDQNTGRDLIPLRKPSDE
DDSSRSNPSYRTKDGHVTKTGISGIRIVEENDVAPSRRPLKKMSSPERWEAKQLIASGVL
RVDEFPMYDEDGDGMLYQEEGAEEELEIEMNEDEPAFLQGQTRYSVDMSPVKIFKNPEGS
LSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLS
AYDMPEWKKDAFGKTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGS
GKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCT
GPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLR
LIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEP
EGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGK
RKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAG
RTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQ
ALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMI
QTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFIQSRSL
RRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQP
VYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKR
KRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagagcttaacaaattgaatcatctctctctcgtctccaatgtctgcaac
gaactggaaacgcatctaggatctgcagaaaaagttttggctgaattcattatcgatctt
ggtcgtcactctgagactgtcgatgaattcgataagaagcttaaggaggaaggtgcagag
atgccggattacttcgtccggtcgttgttaactacaatccacgggatttatcctccgaag
ccgaagtcggagaagaagaaagaggaaggtgatgatcagaaattcaaaggtttggcgatt
aaggatactaaggataaagttaaggagcttgagaaagagattgaaagagaagctgaagag
cgacggagagaggaggatcgaaatagggatagagatcggagggattcgggtagggataga
gatagagataggaatcgtgatgatagaagagatcgacatagggatagagagaggaatcgt
ggagatgatgaaggtgaagatagaagaagtgataggaggcatagagaaagagctcgtggt
ggtgatgatgaaggtgaagataggcgtagagataggcgtgcgaaggatgagtatgtggag
gaggatagaggcggtgcgaatgagccggagttgtatcaggtatataaagggagggttact
agggttatggatgcgggttgttttgttcagtttgataagtttagaggaaaagaaggttta
gttcatgtttctcagatggctactagaagggttgataaggctaaggagtttgtgaagagg
gatatggaggtttatgtgaaagttatatctatttcgaatgataaatatagtctttctatg
agagatgttgatcagaatactggtagagatttgattcctttgaggaagccgtcagatgaa
gatgattcatccaggagtaatccgtcgtatagaactaaggatggtcatgtgactaagact
gggatttcggggatcaggattgtggaggagaatgatgttgcgccttcacgtagaccattg
aagaagatgagctctcctgagagatgggaagcgaagcagttgattgcctctggtgttttg
agagtggatgagtttccaatgtatgatgaggatggagatgggatgctttatcaagaggaa
ggtgctgaagaagaacttgagattgagatgaatgaagacgaacctgctttcttgcaaggg
cagaccaggtactctgttgacatgtctccggttaagatctttaaaaatccagaaggttcc
ttgagtcgtgcagctgcacttcagtccgctctcactaaggaaaggagagaaatgagggaa
cagcagcaaagaacaatgcttgactcaatccccaaggatctgaatcgtccctgggaggac
cctatgcctgaaactggtgaaaggcatcttgctcaagagcttaggggtgttgggttatca
gcttatgacatgcctgagtggaagaaggatgcctttggtaaaactccgacctttgggcag
agatcaaagctttctattcaggagcaaagggagagccttccgatatacaagttgaaaaag
gagctgatacaggctgtgcacgataatcaagttttggtggtcattggtgagactgggtct
gggaagacaacgcaggtgactcagtaccttgctgaagcaggttacacaacaaaaggaaag
attgggtgtactcagcctcgtagggttgctgcaatgtcggttgccaagagagtagctgag
gagtttggttgtcgtttaggagaggaggtagggtatgcgattcggtttgaggattgtact
ggaccggatacagtgatcaagtacatgactgatggtatgcttcttagggagattctgata
gatgaaaacctctctcaatactccgtaatcatgcttgacgaagctcacgagcggacaatc
cacactgatgtgctgtttggtcttctaaagaagctgatgaaacgtagactcgaccttcgc
ctgatagtcacatctgccacattggatgcagagaagttctctgggtatttcttcaactgt
aacatttttaccattcctggaagaacctttcctgttgagatactatataccaaacagcca
gaaacagattacttggatgcagctctgatcacagtccttcagatacacttgactgaacct
gagggtgacattctggtctttttgacgggacaggaagaaattgattctgcgtgccagtct
ctgtacgagaggatgaaaggtctaggtaaaaatgttcctgaactcatcatacttccagtt
tacagtgcccttcctagtgaaatgcagtctagaatttttgatcctccccctcctggtaaa
cggaaagtggttgtagctacaaatattgcagaagcttctttaacaatagatgggatatac
tatgttgttgatcctgggtttgctaagcagaacgtgtacaatccaaagcaagggctggaa
tcgctagtcattactccaatttcccaggcatcggcgaagcaaagggctggacgtgctggt
cgtactgggccagggaaatgttatcgtctgtacacagagagcgcatatcgtaatgagatg
cctcctacatcaatccctgaaatccaaagaatcaatcttggaatgacaaccctgaccatg
aaagcaatgggcattaatgacctgttatcgtttgacttcatggatccaccccagccgcaa
gcactgatatctgcaatggaacagttgtacagcctgggagctttggatgaggaaggattg
ttgacaaagctaggtagaaaaatggcggagtttcctcttgaaccgccgctctctaaaatg
ttgctagctagtgtggatctcgggtgcagcgatgagattttaacgatgattgctatgatc
cagacgggtaacatattttatagaccaagggagaagcaagctcaagcagaccaaaaaagg
gcaaagtttttccagcccgaaggtgatcacttgactttgctagctgtatatgaagcttgg
aaggctaaaaacttctcaggtccatggtgttttgaaaacttcattcagtcacgatcgtta
cgacgtgctcaagacgtgaggaaacaacttctcagcatcatggacaagtataaactagac
gtggtaagtgctggaaagaatttcacgaagataaggaaagcaatcacggcaggattcttc
ttccacggagcaagaaaagatccacaggaaggttacaggacgctggtggagaatcaaccg
gtttatatacacccgagcagcgcgctgttccagagacaaccagactgggttatatatcat
gatcttgtgatgactacgaaagagtacatgagggaagtgactgtgattgacccaaagtgg
cttgttgagttagctccaaggttctttaaagtctctgacccaacaaaaatgagcaagcgt
aagcgccaagaacggattgagcctttgtatgatcgttaccacgagcctaactcatggcgt
ctcagcaaaagacgtgcttga
DBGET
integrated database retrieval system
