Arabidopsis lyrata (lyrate rockcress): 110229154
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Entry
110229154 CDS
T01578
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110229154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
110229154
03009 Ribosome biogenesis [BR:
aly03009
]
110229154
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110229154
Spliceosome [BR:
aly03041
]
Complex A
U2 snRNP components
U2 related factors
110229154
Complex B
110229154
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110229154
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
90S particles
Helicases
110229154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
SRP54
T2SSE
AAA_30
AAA_7
AAA_24
Motif
Other DBs
NCBI-GeneID:
110229154
NCBI-ProteinID:
XP_020884103
LinkDB
All DBs
Position
Unknown
AA seq
729 aa
AA seq
DB search
MGTERKRKVSLFDVMEDPSLSSKNTKSNGLGVAAAAGGGSNLINKWNGKAYSQRYFEILE
KRRDLPVWLQKDEFLNTLKSNQTLILVGETGSGKTTQIPQFVLDAVVADKSDKGKKWLVG
CTQPRRVAAMSVSRRVADEMDVTIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADP
LLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQQYFSGAPL
MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKIN
KEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPEPLTEGGPAGRKIVVSTNIAETSLT
IDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKS
FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
DDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKA
ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMS
RFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDH
KPEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAPHYYDLSNFPNCEAKRVLEKLYKKRER
EKDGSKNRK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgggtactgagagaaagcgcaaggttagtttattcgatgtaatggaagatccttctctt
tcgtcgaagaacaccaaatccaatggtctcggagttgcggcggcggctggtggtggaagc
aatctgatcaacaaatggaacggaaaggcttattctcagaggtattttgagattctggag
aagagaagagatcttcctgtttggctccagaaagatgagtttctcaatactttgaaatct
aatcagactctcatcctcgtcggtgaaactggtagtggtaaaactacacagattccacag
tttgtattagatgctgtggtggctgacaaatccgataagggaaagaaatggttggttgga
tgtacccagcctcgtcgagttgctgcaatgtctgtgtctcgtcgtgttgctgatgaaatg
gatgtcaccattggagaagaagttggttatagcattcgttttgaggattgtactagctct
cgtactatgcttaagtatttgactgatggtatgcttttgagagaggcaatggctgatccg
cttttagagagatacaaagttattattctcgatgaagctcatgaaaggactctagccacg
gatgtgctctttggtcttctcaaagaggtcttgaggaatagacctgaccttaagcttgtt
gtcatgagtgcaaccttagaagccgaaaagtttcagcagtattttagcggtgctcctctt
atgaaagtccctggtaggcttcatcctgttgagatcttttatacacaggaacctgagagg
gactatcttgaggctgctattaggactgttgttcagatacacatgtgcgagccacctgga
gatattcttgttttcttaactggggaggaggagatagaagatgcttgccgtaaaatcaat
aaagaggtcagtaatcttggagatcaagtgggtcctgtcaaagttgtgcctttgtattct
actcttccacctgcgatgcagcagaagattttcgaccctgctccagagcccttaacagaa
ggtggtcctgctggacgaaagattgtcgtctcaaccaacattgctgaaacgtctcttaca
attgatgggattgtttatgttattgaccctggttttgctaagcagaaagtctacaaccca
cggattcgtgttgagtcattgttggtgtccccaatatcaaaggcaagtgctcaccagaga
tcaggtcgtgctggtagaactcggcctggaaaatgttttaggctctacacagagaagagt
ttcaacaatgatctgcagccacagacatatcctgagattttgagatcaaaccttgcaaat
acagtcctgacattgaaaaagcttggtattgatgatttggtgcactttgatttcatggat
cctcctgctcctgagacactgatgcgggcattagaggttttgaattatttgggagcactg
gatgatgaaggtaacttgacgaagacaggtgaaataatgagtgaatttcccttggatcca
caaatgtcaaagatgctcatagtcagtcctgaattcaactgttcgaacgagattctctcg
gtttctgcaatgttatcagtaccgaattgctttgtccggcctagagaggctcaaaaagca
gcagatgaagctaaagctaggtttggacacattgatggagatcacctcacgttgctaaac
gtgtaccacgcctataagcaaaacaatgaagacccaaactggtgtttcgagaactttgtc
aacaacagagcaatgaagtctgcagacaatgttagacagcaactagtgcggataatgtcg
aggtttaatctaaagatgtgcagcacggatttcaacagccgcgactactatgtcaacata
agaaaggccatgcttgctggttatttcatgcaggtggctcacctagaacgcactggccat
tacttgaccgtcaaagataaccaagtggttcacttgcatccatctaattgcctggatcac
aaaccagagtgggtgatttacaatgaatatgtcttgactactcggaatttcatacgcact
gttacagatatccgcggtgaatggttagtagatgttgctccgcattactatgatctttcc
aacttccccaactgtgaagcaaaacgagtcctcgagaaactttacaagaaaagagagagg
gaaaaggatgggagcaagaaccgaaagtga
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integrated database retrieval system
