Arabidopsis lyrata (lyrate rockcress): 110229998
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Entry
110229998 CDS
T01578
Name
(RefSeq) chaperonin 60 subunit beta 2, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110229998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
110229998
03110 Chaperones and folding catalysts [BR:
aly03110
]
110229998
03029 Mitochondrial biogenesis [BR:
aly03029
]
110229998
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
110229998
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
110229998
Messenger RNA biogenesis [BR:
aly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
110229998
Chaperones and folding catalysts [BR:
aly03110
]
Heat shock proteins
HSP60 / Chaperonin
110229998
Mitochondrial biogenesis [BR:
aly03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
110229998
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110229998
Exosomal proteins of other body fluids (saliva and urine)
110229998
Exosomal proteins of breast cancer cells
110229998
Exosomal proteins of colorectal cancer cells
110229998
Exosomal proteins of bladder cancer cells
110229998
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
KH_PARP14_2
Motif
Other DBs
NCBI-GeneID:
110229998
NCBI-ProteinID:
XP_020887109
LinkDB
All DBs
Position
Unknown
AA seq
591 aa
AA seq
DB search
MASTFTATSSLGSLLAPNAIKLSSSSSFGRRHNVCLRRSRPAIVCAAKELHFNKDGTTIR
KLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLV
RQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLM
SKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQF
DRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDIE
QEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKAGKE
VLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQDYEKEKLNERIAKLSGG
VAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLEN
DEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKVLANDNVKFGYNAATGKYEDLMAAG
IIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIPEPEPVPAGNPMDNSGYGY
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgacattcactgccacgtcttcccttggttccttgcttgctcccaatgctatc
aagttgtcttcttcaagctcctttggaaggagacataatgtgtgcctaagaagatcccgt
cctgccattgtatgtgcagccaaggagttgcatttcaacaaggatggcactaccattagg
aaacttcaaactggtgttaacaagctcgcggaccttgttggtgtcacacttggaccaaaa
gggagaaatgttgtccttgagagcaaatatggatccccaaggattgttaatgatggtgtt
actgttgctagggaggtcgagttggaggaccctgttgagaacattggtgcaaagcttgta
aggcaagcagctgcaaagaccaatgacttggctggtgacggtacaacaacttctgttgtt
cttgctcaaggttttattgccgagggtgtcaaggtggtggctgcaggtgcaaaccctgta
ttgatcactaggggcattgagaagacagctaaggctttggttaacgagctgaaactaatg
tctaaggaggttgaagacagtgaactcgctgatgtggctgctgttagtgcgggtaataac
catgaagttggaagtatgattgctgaagcaatgagcaaagtggggaggaagggtgtggtg
acccttgaggagggtaaaagcgctgagaacaacctgtacgttgtggaaggaatgcaattt
gaccgtggttatatctccccatactttgtgacagatagtgagaaaatgtctgtcgagtac
gacaattgcaagttacttcttgttgacaaaaaaattaccaatgcaagagatcttgttggt
gttctcgaggatgccattagaggcggatacccaatcctaataattgcagaagatattgaa
caagaagccttagctactcttgttgttaacaagcttagaggcacattgaagattgcagct
ctcaaagctcctggatttggagagcgcaagagccaataccttgacgatatcgccattcta
actggaggaactgtgattagagaggaagttggtctgtctcttgacaaagctggaaaagag
gttctgggtaacgcttctaaggttgtcctgacaaaggaaatgacaacaattgtgggtgat
ggtaccacacaggaagcagtaaacaagcgtgttgtacagattaggaatcttattgagcaa
gcggagcaagattacgagaaggagaaattaaatgagagaatcgcgaaactctctggtgga
gttgctgtaattcaggttggagctcaaactgagacagagctcaaagaaaagaagctgaga
gtggaagatgcgcttaatgctacaaaggctgctgttgaggaaggtattgtcgttggtggt
ggttgcactctacttcggcttgcatccaaggtcgatgccatcaaggatacccttgaaaat
gatgaagaaaaggttggagcggaaattgttaaaagagcactgagttaccctctgaaattg
atagctaagaatgctggtgtcaatggaagtgttgtcagcgagaaggtgctagctaacgat
aatgtgaaatttggatacaatgctgcaaccggcaagtatgaagatctgatggctgcaggc
atcatcgacccaacaaaggttgtgagatgttgcttggaacatgcagcctcagttgcaaag
acgttcttgatgtctgactgtgtggttgttgagatcccggagccagagccagttcctgcc
ggcaacccaatggacaactcaggatatggatactaa
DBGET
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