KEGG   Arabidopsis lyrata (lyrate rockcress): 110230232
Entry
110230232         CDS       T01578                                 
Name
(RefSeq) protein transport protein SEC13 homolog A
  KO
K14004  protein transport protein SEC13
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013  Nucleocytoplasmic transport
aly04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110230232
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    110230232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    110230232
   04131 Membrane trafficking [BR:aly04131]
    110230232
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     110230232
Membrane trafficking [BR:aly04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    110230232
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    110230232
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    110230232
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_Vps41 WDR55 ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_EIPR1 DSE1_N Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 WD40_RFWD3 WD40_2 Beta-prop_NOL10_N Beta-prop_SCAP
Other DBs
NCBI-GeneID: 110230232
NCBI-ProteinID: XP_020888052
LinkDB
Position
Unknown
AA seq 302 aa
MPPQKIETGHSDTVHDVVMDYYGKRLATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW
QVAWAHPKFGSFLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGFSL
ACGASDGNISVFSARADGGWDTSKIDQAHPVGVTSVSWAPATEPGALVSSGMLDPVYKLA
SGGCDSTVKVWKFSSGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII
WTIGKEGEQWEGTVLKDFKTPVWRVWWSLTGNLLAVSDGNNNVTVWKEAVDGEWEQVTVV
EP
NT seq 909 nt   +upstreamnt  +downstreamnt
atgcctcctcagaagattgaaactggtcatagcgacactgtccatgatgtggtcatggat
tactatggaaagcgactagcaactgcctcatctgattgcaccattaagataaccggagtt
agcaacagcggtggatctcaacatctagctaccttaaccggtcatcgaggtcctgtctgg
caagtcgcttgggcgcacccaaagtttggttcattccttgcttcgtgttcctatgatggg
caaatcatattatggaaagaaggtaaccaaaaccaatggacacaagctcatgtcttcaca
gaccacaaagtttcagtcaactctatcgcttgggctcctcatgaactcggattctcctta
gcttgcggagcatctgatggaaacatatccgttttctcagctagagctgatggcggttgg
gacacatcaaagatagaccaagcacacccggttggagtcacttcagtctcatgggcaccg
gccacagaaccaggcgcactcgttagctctggcatgctcgatccggtttacaaactagca
tccggcgggtgtgatagcaccgtgaaagtgtggaagttctccagcgggtcatggaaaatg
gattgttttccggctcttaacaagcacacggattgggtccgtgatgtggcttgggcaccg
aacttgggtctcccaaagtcaaccatagccagtggttcagaagatgggaaagtgatcata
tggaccatagggaaagaaggtgaacaatgggaaggtacggttttgaaagatttcaaaaca
ccggtgtggcgggtctggtggtcgttgacgggtaatttgttggctgtttccgatgggaac
aataacgttacggtgtggaaagaggctgttgatggagagtgggaacaagtgactgttgtt
gagccatag

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