Arabidopsis lyrata (lyrate rockcress): 9298692
Help
Entry
9298692 CDS
T01578
Name
(RefSeq) exopolygalacturonase clone GBGA483
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9298692
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
9298692
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
9298692
NCBI-ProteinID:
XP_020871509
LinkDB
All DBs
Position
Unknown
AA seq
449 aa
AA seq
DB search
MVGFRRASGVLLVVLVVMATTIVNGTPVVDKAKDAAESVGDKVSEAATTVGDKAKDAAAS
VGVKVPGAKAGGASLDVKASGAKGDGKTDDSAAFAAAWKEACAAGSTITVPKGEYLVESL
EFKGPCKGPVTLELNGNLKAPATVKTSKPHSGWIDFENIADFTLNGNGAIFDGQGSLAWK
ANDCAKTGKCNSLPINIRFTGLTNSKIKSITSTNSKLFHMNILNCKNITLEDIGIDAPPE
SLNTDGIHIGRSNGVNLLGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYP
NEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSTPVLIDQEYCP
YGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALADINLVHNGKEGP
AVSACSNIKPILSGKLVPAACTEVAKTGP
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggtgggttttcgcagagcaagcggagtgcttcttgtggtattagtggttatggccacc
acaatagtaaacgggacaccggttgtcgataaagcaaaagatgcagcagaatcagttggt
gataaagtcagtgaagcagctacaacagttggcgataaagcaaaagatgcagctgcatca
gttggtgttaaagtaccaggagccaaagcaggcggtgcatcacttgatgttaaagcatca
ggagctaaaggagatggcaaaactgatgacagtgcggcatttgcggctgcatggaaagaa
gcttgtgcagcagggagcacgattacagtgcccaaaggtgagtatttggtagagagccta
gagttcaaaggtccatgcaaaggtccagtcactttggaattgaatggcaatcttaaggct
ccggctacggtcaagacctctaaacctcattccggatggattgatttcgaaaacatcgct
gatttcactttgaatggaaacggagccatttttgacggtcaaggttccctcgcttggaag
gccaatgactgcgccaaaaccggcaaatgcaactctctccccatcaacatccgattcacg
ggtctaacaaactcgaaaattaagagtattacatcaacaaacagcaaacttttccacatg
aacatccttaactgcaaaaacataactcttgaggatattggtattgatgcacctccggag
agtctcaacaccgatgggatccacatcggaaggtccaatggcgtcaacttattaggggca
aagattaaaaccggagatgactgcgtttccattggagatggtaccgaaaatctcattgtt
gagaacgtagaatgtggaccgggacacggaatttccattggaagtctcggaagataccct
aatgagcaaccagtaaaaggagtcactgtgaggaaatgcctcatcaagaacactgacaat
ggtgttcgcatcaagacatggccaggatctccccccggtatcgcctccaacattcttttc
gaagatatcacaatggacaatgttagcacccccgttctcatcgaccaagagtactgtcct
tatggccactgcaaagctggggtaccatcgaaagtgaagttgtcggacgtgactatcaag
aacattaagggtacatcagcaacaaaggtggctgtgaagctaatgtgcagtaaaggcgtt
ccttgcaccaatattgctctcgctgacatcaacttggtccacaacggcaaagagggacca
gctgtctcggcatgttctaacatcaagcctattctctccggaaagttggttccagcggct
tgcactgaagtcgctaaaacgggtccttaa
DBGET
integrated database retrieval system
