Arabidopsis lyrata (lyrate rockcress): 9298964
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Entry
9298964 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9298964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9298964
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9298964
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
9298964
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
9298964
NCBI-ProteinID:
XP_002862886
UniProt:
D7MWE0
LinkDB
All DBs
Position
Unknown
AA seq
279 aa
AA seq
DB search
MSLFLKDDSIQIRXRCRRWENENLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKT
NTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYAT
DSIELLRQSGIDFAKNNQFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLT
CQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSD
SLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVENGQIVH
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgtttctaaaagacgattcgattcaaatccgctgacgctgtcgtcgttgggaa
aacgaaaatctcgaatcagaaatggctctgattcgagaagtcgtcgacgatttcccattc
gtagcgatggacacagagttccccggaatcgtgtgtagaccagtgggaacattcaaaacc
aacacagagtaccactatgaaaccctcaaaacaaacgtcaacatactcaagatgattcag
ctcggactcactttctctgatgagaaaggaaacctcccaacgtgtggaacagacaacaaa
tactgcatctggcagttcaatttccgtgaattcgacctcgaatccgacatttatgctacc
gattccatcgagcttcttcgtcaatcaggcatcgatttcgctaaaaacaaccaattcggt
atcgattcgaaacgtttcgccgagcttttgatgtcatcagggattgttttgaatgaaaac
gttcattgggttacattccacagcggatatgattttggttacttgttgaagctattgact
tgtcagaatctgccggaaacacaaacggggtttttcgagatgatcagtgtgtatttcccg
agggtttacgatatcaaacacttgatgaagttctgtaatagtcttcatggaggtctgaac
aaattggcggagctgcttgaagttgagagagttgggatatgtcaccaggcgggatcggat
agcttgttaacgtcgtgtacattcaggaagctgcaggagaatttcttcattggttcaatg
gagaaatattctggtgttttgtatggattaggtgttgagaatggtcagattgttcattga
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