Arabidopsis lyrata (lyrate rockcress): 9299340
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Entry
9299340 CDS
T01578
Name
(RefSeq) putative pectate lyase 14
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9299340
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
9299340
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
9299340
NCBI-ProteinID:
XP_020876391
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MVIARTLFSISATLIIILALFFHVNSVQETRESKHESSRNTSTADNLSDGEWHEHAVKDP
EEIAALVDMSIRNSTYRRKLGFFSSCETGNPIDDCWRCDKKWHRRRKRLAGCAIGFGRNA
VGGRDGRYYIVTDPSDHDPVNPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKT
IDGRGVNVHIAGGACITIQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGI
SIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMM
QVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGN
RFAKEVTKRVGAGEGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLV
GMLTSSSGAFKCRIGTLC
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggtgatcgctagaacattgttctcaatctcagcaactctaatcataattctagcactc
tttttccatgtaaattcagttcaagaaacaagagaatcaaaacatgagagctcaagaaat
acatcaaccgcggataatttatcagacggtgaatggcatgaacacgccgttaaagaccca
gaagaaatagcagcactggtcgatatgagtatacgtaacagtacgtatcgtagaaagcta
gggttcttctcctcttgcgaaactggaaacccaatcgatgattgttggcgatgcgataaa
aaatggcatcgccggagaaaacgattagcgggttgcgcgattggtttcggacgtaacgca
gttggaggccgtgatggacgttactacatagttactgatccatctgatcatgacccggtt
aacccaaaacccggtacactccggtacgctgtgatacaagatgaaccgctatggatcgtc
tttaaacgtgacatggtcattactttaagccaagaactaatcatgaatagcttcaaaacg
attgatggtcgtggcgtgaacgtacatatagctggtggtgcatgtatcacgattcagtac
gttacgaatattatcatccatgggattaatattcacgattgtaagcgaaccggtaacgct
atggttcggagttcggagagtcattatggttggagaactatggctgatggtgatgggata
tcgatttttggatcgagtcatatttggattgatcataattctctttcgaattgtgctgat
ggattgatagatgcaattatgggatctactgctattaccatctctaataattatctcact
caccacaatgaggctattttgttggggcataccgattcatacaccagagacaaaatgatg
caagtaaccattgcatacaaccattttggagaaggtcttgtacagagaatgccaaggtgc
aggcatggatacttccatgtagtaaacaacgattacactcactgggaaatgtatgcaatt
ggtggaagtgctaatcctaccattaatagccaaggaaaccggttccttgccccgggaaac
cgtttcgctaaggaggtgacgaaacgggtaggtgcaggggaaggagaatggaacaattgg
aactggagatcccaaggagacttaatgctcaatggtgcctattttacttcatctggagct
ggagcttctgcaaattacgccagagcctctagtttggctgctaaatcatcttcccttgta
ggtatgcttacctctagctcaggtgctttcaaatgcaggatcggtacgctttgttaa
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