Arabidopsis lyrata (lyrate rockcress): 9299418
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Entry
9299418 CDS
T01578
Name
(RefSeq) protein transport protein SEC16A homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9299418
Membrane trafficking [BR:
aly04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
9299418
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
9299418
NCBI-ProteinID:
XP_002865115
UniProt:
D7MP44
LinkDB
All DBs
Position
Unknown
AA seq
1358 aa
AA seq
DB search
MASTADFLLEDQTDEDFFDKLVDDSYTPTASSSAKELKFDDGSDSDDARAFANLSVVDDV
VGDGDVALNEAGFGNDVANEGTSGSVGKEEPSSSIAPEALQFVNSDANKLRDDDDVVRSG
VDDMPLTETAKESNIVDGSGSPGVKEVGWGSFYADSSVNDGRGFGSYSDFFTELDGTAGD
LQGQAEVAVATGGNLVANATSVGLDNSAGFEQHHGQVHHDSGSGQYVDNSQSWENLYPGW
KYDASTGQWYQVDGHDASVNSQESYTNSTSNWESVAADISDVAYLKQSTTSAAAGTAESV
STWNQVSQVGNGYPEHMVFDAQYPGWYYDTIAQEWRSLDSYNQASQTTVTGQAHDQQVQN
GHAHTATYHSNSQSSMYDVNDKNQSFKAQEYAMQSQHGSWDQSYYANNQQAANTWQSVNV
GQAEPAINSNSLSSFRGNQHVNNLYSTEPVAEQFKPNAIGAQSFIPQHMNVATVTQNGPL
SFSNGVYNRQQSVDDAHQSFQNNQLFSPSAGRSSDGRPPHALVSFGFGGKLILMKDINGS
LQNSSFGSQGIGGSSASVLNLAEVISGSSSYSSQGEDSLSYFRCLHQQSLPGPLVGGNVG
SKELHKWIDERILNCESSYMDFSRGKLLKMLLSLLRISCQYYGKLRSPFGTDASQKETDS
AEAAVAKLFAFAKKDGLQNGYAPISQCLQHLPPESQMQVTASEVQNLLASGRKMEALQCA
QEGHLWGIALIIAAQLGDQFYVDTVKQMALRQLIPGSPLRTLCLLVAGQPAEVCPAGSSS
MLDNWEENLGIITANRTTDDELVITHLGDRMWKDRGEIIAAHICYLIADKNFDPYSESAR
LCLVGADHWKCPRTYASPEAIQRTELYEYSKTLGNSQYILLPFQPYKIIYAHMLAEVGKL
STALKYCQAVLKCLKTGRSPEVEMWKQFVSSLEERIRIHQQGGYTANMAPAKLVGKFLNF
IDTTASRVVGGMPPPAPHPTTGNLQVNDYQHQQQEAAKLSYSQSANTMSSLMPPASSIEP
VRELGGNGRTMAVHSRSVSEPDFGRTPIQDQTDSSKDKAADEVTQVKATRSVPSSRFSRF
GIGILKRVLPSRSAKEAKLGDENQFYYDDNLKRWVERGVEPPAEEAALPPPPTLGAFRSN
SLGYENKSDMKNEMSPSSGSWSSGSPTPSENSSGIPPVSQGSNQFSARGRMGVRARYVDT
FNQGRGNSSSMYQSPPVQSAKPPIPAKAKFFVPAAPALFANDQVMESVSDETRQENSADE
GVVGSAGAPGPSQSSFQSPTPSPMAMQRFPSLDNIKRSGSGISLNGDLPPSGSRRTASWS
GSVNSSSFMSPTSASTFKPSPLNSSSSSLGEELQEVEL
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgactgctgatttcctcctggaggatcaaacggacgaggatttcttcgacaaa
cttgttgatgattcctatactcctaccgcttcatcctctgctaaggagctcaaattcgac
gacggtagtgattccgatgacgccagagcttttgctaatctctccgtcgttgacgatgtt
gtgggtgatggagatgtcgcattgaatgaagcaggttttggaaacgatgttgcaaacgag
ggtactagtggttcggtgggaaaagaagagccttcttcatctattgctccggaagctctt
caatttgtcaacagtgatgcaaataagttaagggatgatgatgatgtggtgagatcgggg
gtggatgatatgccactaactgaaacggcaaaagaaagtaatatagtcgatggatctggg
agtcctggggttaaggaggttggttggggctccttttatgccgattcatctgtaaatgac
ggtcgtgggtttggttcatactctgatttcttcactgagttggatggaactgcaggggat
ttacagggacaggccgaggtagctgtggccactggaggcaacttagtagccaatgcaaca
agtgttggtttagataattcggcagggtttgagcaacaccatggtcaagtgcaccacgat
tctggaagcgggcagtatgtggataatagtcaatcttgggaaaatctctatcctgggtgg
aaatatgatgcaagtactggtcaatggtatcaagttgatggtcatgatgcaagcgtgaat
tcacaggagagctatacaaactctacaagtaactgggaaagcgttgctgctgatatctca
gatgttgcttatctgaagcagagtacaacatctgcagcggctggcacagccgagagtgtg
tctacttggaaccaggtttcacaagtggggaatggatatccggaacacatggtctttgac
gctcagtatcctggatggtactatgatacaattgctcaagagtggcgctctctggacagc
tacaaccaggcttctcaaacaactgtaactggtcaagctcatgatcagcaagttcagaat
ggtcatgctcatacagctacgtatcacagtaatagccagagtagtatgtatgatgttaac
gacaaaaaccagagtttcaaagcgcaagaatatgctatgcagagccaacacggaagttgg
gaccaatcttactatgccaacaatcagcaggctgcaaacacttggcaatcagtaaatgta
ggtcaggctgagcctgctataaattctaattcattatcaagcttcagaggaaaccagcat
gtaaataatttgtacagtacagaacctgtggctgaacagtttaagccaaatgcgattgga
gcgcagagcttcatcccgcagcatatgaatgtggctactgtcacacagaatggaccattg
agtttctcaaacggtgtctataatagacagcaatctgtagatgatgctcatcagtctttt
cagaacaatcagcttttctccccaagtgcgggaagatcatctgatggtcgtccaccacat
gcgcttgtcagttttggatttggtgggaagctcattcttatgaaggatataaatggttct
ctgcagaattcatcatttggaagtcagggaattgggggaagctccgcctctgtcttaaac
ttggcagaagttatttctgggagttcctcttattccagtcaaggggaagactctttgagc
tactttcgttgcctgcatcaacaatctcttccaggtcctttggtaggaggaaatgttgga
agtaaagagttgcacaagtggattgatgagagaattttgaattgtgaatcttcctatatg
gatttttcaagagggaaactcttaaagatgcttctttctttactccgaatatcttgtcag
tattatgggaaactccgttctccttttggtactgatgcatcgcaaaaggaaacggactct
gctgaagcagcagtcgctaagctttttgcatttgcaaagaaagatggcttacaaaatggt
tatgctcctattagccaatgcttgcagcatttaccacctgaatcacaaatgcaagtaact
gcttcagaggttcagaatcttctggcttctggtagaaaaatggaggctctacaatgtgca
caagaaggccatttatgggggatagcgcttattatcgcggcacaacttggggatcagttc
tatgtagacactgtgaaacaaatggcccttcgccagctgataccagggtcacctttacgg
acattgtgcctactggttgcaggacaaccagctgaagtgtgtcccgctggaagtagtagc
atgcttgacaattgggaagagaatttgggtataataactgctaacagaaccacagatgat
gagcttgtgattactcatcttggagatcgcatgtggaaagataggggcgagataattgcg
gcgcatatttgctatttaatcgcggacaagaactttgatccatactcagaaagcgccaga
ctctgccttgtcggagcggaccattggaaatgtcctcgaacatacgcaagtccagaggct
atacagaggacagagttatatgaatactctaagacgctgggaaattctcagtatatcctg
ttaccgtttcaaccatataaaatcatatatgcccatatgctggctgaagttggtaaactt
tcgactgcgctgaagtactgtcaagcagtattaaaatgcctcaagacaggccgatcacca
gaagtggaaatgtggaaacagtttgtttcatctcttgaagagagaatccgtatccaccaa
cagggcgggtatactgcgaatatggccccagcaaaacttgttggaaagttcctgaacttt
attgatactacagcatctcgtgttgttggggggatgccaccacctgcaccacatccaaca
accggaaacctgcaggtaaatgactatcaacatcaacagcaggaagcagctaagttatca
tatagtcaatcggctaatacaatgtcatcattgatgccacctgcttcttcaattgaaccc
gtgcgtgagttgggtgggaacgggaggacaatggcagtacattctagaagtgtatcagag
ccagatttcggtaggacgccaatacaggatcagactgactcctcaaaagacaaagctgct
gatgaggtgacacaggtgaaagcaactcgtagtgtgccaagttctcggtttagccgcttt
ggtattggaatactgaagagggtcttaccatctcgttcagctaaagaggcaaaactgggt
gacgagaatcaattctactatgacgataatctaaagagatgggtggaaagaggtgtggaa
cccccagctgaggaagctgcactacctcctcctccaacgttaggcgcattccgaagcaac
tcattgggttatgaaaacaaatctgacatgaagaacgagatgtctccatctagtgggagc
tggagtagtggcagcccaactccgtcagagaattcttcgggaatcccaccagtatcacag
ggctcaaaccaattctcagctcgtggacgtatgggtgtgcgtgcaagatacgttgacacc
tttaatcaaggccgtggaaactcctcgagcatgtatcagtcacctcccgtacaatctgct
aaaccaccgattcctgcaaaagcaaaattcttcgtcccagcagcaccggcattgtttgca
aacgaccaggtaatggaatcagttagtgatgaaaccagacaggagaactcagcagatgaa
ggggtagtagggtctgcaggcgctccaggaccaagccagtcttcattccagtccccgaca
ccatctccaatggcaatgcagagatttccaagtctagacaacatcaaaagaagtggatca
ggaataagccttaatggtgatcttcctccgtcaggatcaagaagaacagcttcatggagc
ggaagcgtcaacagctcgtcgtttatgtctccaacgagtgcatcaacattcaaaccaagc
ccactgaacagtagcagcagcagcttaggagaggagcttcaggaagtggaactgtaa
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integrated database retrieval system
