Arabidopsis lyrata (lyrate rockcress): 9299844
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Entry
9299844 CDS
T01578
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03008
Ribosome biogenesis in eukaryotes
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
9299844
09123 Folding, sorting and degradation
03018 RNA degradation
9299844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9299844
03019 Messenger RNA biogenesis [BR:
aly03019
]
9299844
03009 Ribosome biogenesis [BR:
aly03009
]
9299844
03016 Transfer RNA biogenesis [BR:
aly03016
]
9299844
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
9299844
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
9299844
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
RNases
9299844
Transfer RNA biogenesis [BR:
aly03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
9299844
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
9299844
NCBI-ProteinID:
XP_020891142
LinkDB
All DBs
Position
Unknown
AA seq
1007 aa
AA seq
DB search
MGVPSFYRWLIQRYPLIIQEVIEEEPLEVNGGVTIPIDTSKPNPNGYEYDNLYLDMNGII
HPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARRF
RAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYIH
VRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIML
SLATHEIHFSILREVVFFPGEEDKCFLCGQVGHRAADCEGKMKRKAGEMLDDTEADVVVK
KPYEFVNIWILREYLEHDMQIPNQRSKKNLDRLIDDFIFICFFVGNDFLPHMPTLEIREG
AIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGTYENQIFQKRAQVQQRQSGRF
IRDKAREKARDSVQASRKFSGKLVQLDSLDEVSDSLHSSPPRKHLRLSLDNNIGVANVET
ENSFKAEELDNGEDLKFKLKKLLRDKSDVFSSGKGEQDKVKLGATGWRERYYEEKFTAKS
AEEMELIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKGLDSLDIKFEL
GSPFKPFNQLLAVLPSASAHALPQCYRTLMTDPASPIADFYAADFEIDMNGKRYSWQGIS
KLPFVDERRLLEAAALVEKSLTNEEIRRNSVLFDMLFVVASHPLAELIRSLNSRTNNLSN
EERATIIEKIDPGLSDGMNGYIASCGGDSQPPCFSSPVEGMEDVLANHVICAIYKLPDDI
RGSEITHQIPTLKIPKKTIHLVDLKAEGLLWHEDGDRRRAPSKVKKIKRYNPEGSISGNR
LGKAAHRLVLQTINAQPDSTHINSEPALCPNTIFQNQRVPKRIPAFRENGIQWISPPTQI
TPKKMKSLESQKTRKKNDTPQSRDKSKKLKSSLKVIPLNMKKTKNPQRDFTRGKKKENIT
PQRKPTKAERQAKHIRMMEEAKRIKERKKEKYLRKKAKYAQKDPNTA
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccgtcgttctacagatggttaatccagaggtatccattgattatacaagaa
gtcattgaagaagaaccactcgaagttaatggcggcgtcacgattccaatcgatacaagt
aaacctaatcctaatggttacgagtatgataatctctatctcgacatgaacggaatcatt
catccatgtttccatcctgaagataaaccttctcctactacgtttacggaggtgtttcaa
tgtatgttcgattacattgataggctttttgttatggttcgacctcggaagctcttattc
atggctattgatggtgttgctccaagagctaaaatgaatcaacagagagctagacgattt
agagctgcgaaagatgcagctgaagcagcagctgaagaagagcagctgcgggaagagttt
gagagagaagggaagaaattgcctcctaaagtagattctcaagtttttgactctaatgtt
ataactcctggaacagagttcatggctactctgtcgtttgcgttgcgatactacattcac
gttagactaaattctgatcctgggtggaaaaatattaaggttatactttcggatgctaat
gttcctggtgagggggaacacaagatcatgtcatacattcgttgtaataagaaccatcct
ggttataacccaaacactcatcattgcctatatggtttggacgccgatttgatcatgctg
tctttggccacccacgaaattcatttttcaatccttcgtgaggttgttttctttcctgga
gaggaagacaaatgcttcttgtgtggtcaagttgggcaccgagcagcagattgtgaggga
aagatgaagaggaaggcaggagaaatgcttgatgatactgaggcagatgttgtggtgaag
aagccatacgagtttgtcaatatatggatacttcgagagtatttggaacacgacatgcag
attcctaaccagcgatcgaaaaaaaatttggaccgcttaattgatgacttcatcttcatt
tgttttttcgttgggaatgatttcctgccacatatgcctacgctagagatacgggagggt
gctatagaactgctgatgtctgtgtacaagaataaatttagatcagcaaaaaaatacttg
accgattcaagcaagctgaacttaagaaatgtggagcgtttcatcaaagccgttgggacc
tatgaaaatcagatatttcagaagagagcacaagtacaacagaggcaatcaggaaggttt
attcgtgacaaagctcgtgaaaaagctcgtgacagtgttcaagcaagcagaaaattctct
ggcaagttggtgcaattagattctctagatgaagtgtctgattcattgcattcctcacct
ccacgaaaacatttgcgtttgtctttggataataacattggtgtggcgaatgttgaaaca
gaaaatagcttcaaagctgaagaactagataacggagaagacttaaagtttaagcttaag
aaactgctgcgggataaatctgatgtgttcagctcaggaaagggagaacaagataaggtt
aagctaggtgcaacaggatggagggaaagatactatgaagagaaattcacagctaagtct
gctgaggaaatggaactaatacgcagagatgttgttttgaagtataccgaaggtctttgt
tggataatgcattattattatcatggtgtttgttcctggaactggttttatccatatcat
tacgcacctttcgcatcagatctcaagggccttgatagcctagatattaagtttgaacta
ggttccccgtttaaacctttcaatcaacttctggctgttcttccatctgcaagtgcacat
gctctcccgcagtgctataggacattgatgacagatccagcttcgcctatagctgatttt
tatgctgctgattttgagattgacatgaatggaaaacgctactcttggcagggtatatcg
aaactgccttttgttgacgaaaggcgtcttctggaggcagctgcactagtggagaaatca
ctgacgaacgaagaaattcgaagaaacagtgtgttgtttgacatgctgtttgttgttgca
tctcatccccttgctgaactcatccgttctcttaatagccgtaccaacaacttgagcaat
gaagaacgagcaactatcatcgagaaaattgaccctggactaagtgatgggatgaatggt
tacatagcttcatgtggtggagatagtcagcctccatgtttcagctccccagtcgagggc
atggaagatgttttagccaatcatgtcatttgtgctatatacaaacttccagatgatatc
agaggcagcgagattactcatcaaattccaacattgaaaatccctaaaaagactatacat
ctagtggatttgaaagctgaaggtcttctatggcatgaagatggtgacagaagacgagct
ccttcaaaagttaaaaaaatcaagaggtataatccagaaggatctatttctgggaatagg
cttgggaaggcagcacacaggcttgtgttgcaaacaataaatgcccaacctgatagtacg
cacatcaactcggaaccagcgttgtgtccaaatactattttccagaaccaacgagtgccg
aaaagaatcccagcatttcgagaaaatgggatacaatggataagccctccgactcaaatc
actccgaagaagatgaaaagccttgaaagtcaaaagactaggaagaagaatgatacccct
cagagtcgagacaaatcgaagaagctgaaaagctctctgaaagtaatccctttaaatatg
aagaaaactaaaaaccctcagagagatttcactcgggggaagaagaaggaaaacataacc
cctcaaaggaaacccactaaggcggagaggcaggcgaaacacattcgcatgatggaagag
gcgaaaaggataaaagagaggaaaaaagagaagtatttaagaaagaaagccaaatatgca
caaaaggatcccaacacagcttga
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integrated database retrieval system
