KEGG   Arabidopsis lyrata (lyrate rockcress): 9300058
Entry
9300058           CDS       T01578                                 
Name
(RefSeq) bromodomain and WD repeat-containing protein 1
  KO
K11797  PH-interacting protein
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:aly04121]
    9300058
Ubiquitin system [BR:aly04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     9300058
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR75_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_EML Bromodomain WD40_MABP1-WDR62_2nd WDR55 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_RIG_2nd VPS8_N Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Auxin_resp Beta-prop_IP5PC_F Agenet
Other DBs
NCBI-GeneID: 9300058
NCBI-ProteinID: XP_020885698
LinkDB
Position
Unknown
AA seq 1684 aa
MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIAQVVAPNIDLDLREVYFLILHLL
SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLSSGDENDDGNSFPLNYTELAKRYSH
VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL
KAPPIGMRWPHMHADQVRGISLREIGGGFGRHHRAPSIRAACYVIAKPSSMVQKMQNIKR
LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI
FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD
ARGAQFAPRIYVPRPPSPDGKNSGPSSSNAQQSHQIFCCAFNANGSVFVTGSSDTLARVY
SVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFKN
SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRI
LPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNPR
IAMSAGYDGKTIVWDIWEGIPIQIYEISHYKLVDGKFSPDGTSIILSDDVGQLYILSTGQ
GDSQKDAKYDQFFLGDYRPLIQDIYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQT
TFQKRRLGALGKEWRPSSLKLAVGPDITLDQDYQMPPLADLDLAEPLPEFIDVMEWEPEV
DILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESDEDDDHQNSLRRSKRKKDK
KEAGIMTSSGRRVKKRNFDELEGAPSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAAARN
ALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKGKNI
LVCDSDDGAQQCDIRETHPTERRRLVLRFPVRNSDKLTLLENLPGSSSDVPTPTLGNGCA
EDSRIPGNLDIHTNQFEGLDVSKVKWGMVKARTTKRIRGEAISSHELMGSDPEGKENNLK
EDANHHGNGVTAPSCLELKTDIDGMAVDTDTVISSGLPNGGKRYPELDGSPSRLADDRAS
NGSQDVTGHRHNLIDSLPPISTTLRIRSKRVSRAPDTSLRQEGKPLSIDQETGGSDALND
GFEDAKCDLALDCQKDGVVGTEISLRNDCVLELNPQISDALSIANDVPVSHSHPKRMFDF
VYRRKSRKYNNNLDRDAAITKEISPGSCSQDQGSGSKSHEGASNGFHGTQLNGLEKSEGS
LTHIQDKISDSRGNQNSQEELRSASGATLRLRSTRNRKSTYPFSETKPIETKKPQQLIEN
VSWLTLSIHEEGSRYIPQMGDEVAYLRQGHQEYLNFSSLREVAPWTSIKGGNIKAVEICK
VESLEYATLPGSGDSCCKMILKVIDPNSEVFNKAFKLTLPEVVTFPDFLVERSRYEAAIQ
RNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPKSPDFPDSPWERYTVKYKSDPAETHLH
SPWELFDADTKWEPPHIDDEQRNRLLSALTKLETSDKRTQDSYGLRKLNQTVGNSSYTNR
FPVPLSLEVIRSRLENNYYRSVEALRHDVAVMLSNAETFFGRNKSVAAKISNLSNWFDRM
LPSS
NT seq 5055 nt   +upstreamnt  +downstreamnt
atggctcttaggaaaaatactccaaaaggcgattcagtttcactccctatgaagccgttg
aatttctccagaaaattgccagggaatgtgcagattccagaccctgatattgctcaagtt
gttgcgcctaacattgatttagacctccgtgaagtttactttttgatactccacttactt
tcatctgggccatgccagaaaacttatgcactcttgcgacatgaacttcttgaacatgag
cttcttcctcgaagatatcatgcttggtactcgaggagtggattgtctagtggggatgag
aatgatgatggcaattcctttcctttgaactatactgagttggctaaaaggtattctcat
gtaaaaaaagatcacctggtggagcttctaaagcaattggtctttgtttcgaataggcct
aatccctcacgagggatcggtgatggaaataaaatgattggagctggtgttccaacactt
ttaggcactggctcgttctcccttttgagctctgacaaggaaatagttggaagtgatctc
aaagcaccacctattggcatgcgttggcctcatatgcatgctgatcaggttcgtggtatt
agtttgagggaaattggtggtggttttggcagacatcatcgggccccatcaattcgtgca
gcatgttacgtcattgcaaaaccatcgtcaatggtacaaaagatgcagaacatcaagagg
ctacgtggacacagaaatgctgtgtactgtgctatattagatcgctcaggaaggtacgta
atcactggttcagatgaccgccttgtaaaagtatggtcaatggatactgcatactgcctg
gccagctgtcgagggcatgaaggtgacataactgatcttgctgtgagttcgaacaacatt
ttcatagcatccgcatcgaatgattgtgtgatccgcgtttggcgattgccagatggctta
ccagtttctgtcctccgtggacatactggagctgttactgctattgcatttagtcccaga
cctggatccccataccagcttctctcatcgtctgatgatggtacatgtaggatatgggat
gctcggggagcccaatttgctccccggatatatgtccctaggcctcctagtcctgatgga
aagaacagtggcccttcttctagtaatgctcagcagagtcaccaaatcttttgctgtgca
ttcaatgctaatggatctgtctttgtcactggcagttctgacactcttgctagagtatac
tcggtttggagtgctaataagaccaatactgatgatccagagcagccaaatcatgagatg
gatgttctagctggacatgagaatgatgttaattatgttcagttcagtggttgtgctgcg
ggatctaaattttctgtaactgactactcaaaagacgagaatgttccaaaatttaagaat
tcctggttttgtcatgataacatagttacatgctctcgtgatggtagtgcaatcatttgg
atcccaagatcgcggagatcgcatggaaaaagctgccgatggacacgagcatatcatctc
aaggttccacctccgcccatgcctcctcaacctcctagaggtgggccacgtcaaaggatc
ctacctacaccccgtggggttaacatgattgcttggagtctggataatcgttttgtcctt
gccgctatcatggattgtagaatatgcgtgtggaatgcctctgatggtagcttggtacat
tctttgactggtcatacagcatctacatatgttatggacgtccatcctttcaatcctcgt
atagctatgagtgctggctatgatggaaaaacaatagtgtgggatatatgggaaggcata
cctatccaaatatatgagatttcacactacaagttggttgatgggaagttttcaccggat
ggaacatcaattatactttcagatgatgtgggccaattgtacatattaagtacaggccaa
ggggattctcaaaaagatgctaaatatgatcagttcttcctgggggattatcggccatta
attcaggacatatatggtaatgtccttgaccaggaatctcagcttcaaccttatcgtcga
aatatggaggatcctctttgcgattcagggatgattccatatgaagagccatatcagacc
acgtttcagaaacgacgactcggcgccttaggcaaagaatggcgaccatcttctttgaag
cttgctgtcgggccagatatcactttagatcaagattaccaaatgccacctctggcagat
ctagacttagccgaaccgttgccagaatttatagatgtaatggagtgggaaccagaagtt
gatatcttaagtgatgaaaacgactctgaatacaatgtgccagaggagtattcgtctgga
aaagagcaagaatgtttaaattcttcaacctctggtgagtcaggttccagttccggtgaa
agcgatgaggatgatgatcatcagaatagccttagaagatccaaaaggaaaaaagataag
aaagaagctgggatcatgacttcttcgggtaggcgcgtcaaaaagaggaactttgatgag
cttgagggagctccaagcaacaaaaaacgtaccaggaaatctaggagtggtcgtaaagaa
tcgaaaaggaaatcttcaaaatctaaatcgtccagacctaggcgagcagctgcacgaaat
gctctctcttggttttctaagattacaggtacatctaaagatgcagaagaggaagaggtc
tctgaattgagtgattcatcagaaagtgaatcgacaacacaagactcaggcactggggat
agtgaacttgaagtagctttgttaaatgggcatgggaagcaatcgaaggggaaaaatatc
ctcgtatgtgattcagatgatggggctcaacaatgtgatatcagagaaactcatcctact
gaaaggaggagattggttcttagatttcctgttaggaattcagataagcttactttactg
gagaacctacctggatcatcttctgatgttccaactccaactttagggaacggctgtgct
gaagactcgaggattcctgggaaccttgatattcacacaaatcaatttgaagggctagat
gtaagtaaagtcaaatggggaatggttaaggctcgtacaacgaagcgaataagaggtgaa
gcaatatcatcgcatgaacttatgggctctgacccggagggaaaggaaaataatcttaag
gaagatgcaaatcaccatggaaatggtgttacagcacctagttgtttggaattgaaaaca
gatatagatggcatggcagttgacactgacacggtgatctccagtggtttgccaaatggt
gggaagcgatatccagaactggatgggtcaccaagtcgactggctgatgacagggcctct
aacggttctcaagatgtaaccggtcaccggcacaatctaattgatagccttccaccaatc
tcaacgacattgaggatacgctccaagagagtttcaagggctccggatacatctttgagg
caagaaggaaaacccttatcaatagatcaagagactggtggctctgatgcattaaatgat
ggttttgaagacgctaaatgtgatttggcattggactgtcaaaaggatggtgtggttggg
acagagatatctctgcgaaatgactgtgttctggaattaaatcctcagatcagtgatgcg
ctctcaattgctaatgatgttcctgtgtcacactcacatcctaaacggatgtttgatttt
gtctatagacgaaagtcacggaagtataacaacaacttagacagggatgctgctattact
aaagaaatcagtccaggttcttgtagtcaggatcagggtagtggctctaagtcccatgaa
ggtgcctctaatgggttccatgggactcagttgaatggattagagaagtcggaaggcagt
ttgacacacatccaagataaaataagtgattcacgtggaaaccaaaactctcaggaagaa
ttgagatctgcttctggggcaacacttcgtttgagatccacaagaaatagaaagtccact
tatccttttagtgaaactaaacctattgaaacaaagaagccgcaacagttaatagaaaat
gtatcctggttgacattatcgatacatgaagagggttctcgttatattccacaaatgggg
gatgaagttgcgtatttgcgacaggggcatcaagaatacttaaactttagctccctgagg
gaggtggctccttggacttcaataaaaggaggaaatataaaggctgtggaaatttgtaaa
gtggaaagtcttgaatatgcaactcttcctggttctggggatagctgctgcaaaatgata
cttaaggtcatcgatccaaactccgaagtgttcaacaaagctttcaaacttacgttgcct
gaggtggtgacctttccagattttcttgtggaaagaagtcggtatgaagcagcaatacag
aggaactggacttgcagggataagtgtaaggtttggtggagagacgaaggcgaagaagat
ggtagttggtgggaaggacggattctagctgtgaaacccaaatcacctgattttcctgat
agtccgtgggagaggtacactgttaagtacaagagtgaccctgccgagacacatcttcac
agtccctgggagctttttgatgctgataccaagtgggagccgcctcacattgatgatgag
caacgaaaccgtttgctctcggccttaacaaagttagagacttcagacaaaagaacccag
gattcttatggcctccgaaaactgaaccagaccgtgggaaactccagctacaccaacagg
ttcccagttcctttgtctcttgaagtaatcagatcaaggcttgagaacaactattaccga
agtgtggaagcattaagacacgacgtagcagttatgttgtcgaatgcagaaactttcttt
ggtcgaaataaaagcgtagcagccaaaatctcaaatctctctaactggttcgaccgcatg
ctaccttcttcgtag

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