Arabidopsis lyrata (lyrate rockcress): 9300187
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Entry
9300187 CDS
T01578
Name
(RefSeq) E3 ubiquitin protein ligase RIN3 isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
9300187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9300187
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
9300187
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
9300187
Multi subunit type E3
ERAD complex
9300187
LMBR1L-GP78-UBAC2 complex
9300187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
CUE
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-C3HC4_2
zf-RING_11
zf-C3HC4_4
Endonuclease_7
zf-RING_16
E3_UbLigase_EDD
zf-RING_5
zf-RING_Vps41
zf_RING_Vps8_fungal
U-box_ZFPL1
zf-HC5HC2H
RINGv
PHD
Motif
Other DBs
NCBI-GeneID:
9300187
NCBI-ProteinID:
XP_020867634
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MEIRYLPISLATTALSFVGLQVWTELSLDRLRADGIITKNVSLGDSENTLELLLSSYTTI
ALLASFVLNVYILLVLSLKTLFFGDLYAIETRKLVERLANYIIYKGTFLPLVVPPTVFQG
VLWTICLTVLCTLKMFQALARDRLDRLNASPSSTPWTYFRVYSALFMVLSADLCWIKLSL
MIYSTIGSSVYLLLLFEPCSVAFETLQALLIHGFQLLDMWINHFAVKNSDCQRSKFYDSM
TAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWWLHGMAFHLVDAVLFLNIRALLSA
ILKRIKGYIKLRVALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCNHLFHLGC
LRSWLDQGLNEVYSCPTCRKPLFVGRAESEANPSRGEVSSDEHLARQFDRQNNSVHALTT
GMFPTETPNSTESDPWRNSGLDQSWLQTWSDQGVDVAGPSAGSRSVGLGQVQLMMRHLAS
VGEGYGQTALDDASWGLWPMNPSQASASSTYVPPGAGGRTGGLHLRTVSRAANNMASILA
MAETVREVLPHVPDEIIFQDLQRTNSVSVTVNNLLQM
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggagataagatatctgcccatttctttggcaacaacagctttgagctttgtgggttta
caagtctggacggagttgtctcttgatagacttagagctgatgggattatcaccaagaac
gtttctttaggagattctgagaatacccttgagctgcttttgagttcttacactacaatt
gccttgctggcaagttttgtactcaatgtgtacattcttcttgttctttctctcaagact
ctgttttttggggatctatatgccattgaaactagaaagctggtggaaaggcttgccaat
tacatcatttacaagggcacttttctgccattggtggttccaccaacagtatttcagggg
gtcctatggacaatctgcttgactgttctgtgtactctaaagatgtttcaagctttggct
agagatcggcttgatcgattgaatgcgtctccttcttctactccttggacatactttcgt
gtgtattcagcactgttcatggttctctccgctgatttgtgctggataaagctttccctt
atgatatacagtacaattggttcatctgtgtatttattgttactttttgagccatgcagt
gtagcttttgagacattgcaggcgttgttgattcacgggtttcaactacttgatatgtgg
atcaaccactttgcagtcaagaattcagattgccaaagatcaaagttttatgattctatg
acagcaggctcattattagaatggaaaggtctcctcaaccggaatctgggtttcttccta
gatatggctaccttggtaatggccctcggtcattatttgcacatctggtggctccatgga
atggccttccatctggtggatgcagttttgtttctcaacatacgtgccttgctaagtgca
attttgaaacgaataaaaggatacatcaaactgagagtagctctaggtgctcttcatgca
gctcttcctgatgcaacttcagaagagctacgggcatatgatgacgaatgtgctatatgt
agggagccaatggctaaggctaaaagacttcactgcaaccacctttttcatcttggatgc
ctgcgatcatggttagatcaaggtttaaatgaggtttactcttgtcctacatgccgtaag
cctctttttgttggtagagctgaaagtgaggcgaatcctagcagaggagaagtatcaagc
gatgaacacttagcccgtcaatttgatagacaaaacaattcagtgcatgccctaaccact
gggatgtttccaactgagacgccaaattcaactgaaagtgatccgtggaggaattcagga
ctggatcaaagctggctgcaaacatggtcagatcagggtgttgatgttgcgggtccctct
gcaggctccagatccgttgggctggggcaggttcaattgatgatgaggcatcttgcatct
gttggggaaggttatggtcagactgcacttgacgatgcttcttggggtctctggccaatg
aatccttcgcaagcatcggcttcatctacatatgttcctcctggtgctggtggaagaaca
ggtggcctgcatctgagaactgtctcccgtgcagcaaataatatggcgagtatactagct
atggccgagacagtaagggaagtccttccacatgtgcctgatgaaataattttccaggac
ctgcaaagaacaaattctgtttctgttacagtgaacaatcttctccagatgtga
DBGET
integrated database retrieval system
