Arabidopsis lyrata (lyrate rockcress): 9300736
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Entry
9300736 CDS
T01578
Name
(RefSeq) THO complex subunit 4A isoform X1
KO
K12881
THO complex subunit 4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9300736
09122 Translation
03013 Nucleocytoplasmic transport
9300736
03015 mRNA surveillance pathway
9300736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9300736
03041 Spliceosome [BR:
aly03041
]
9300736
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
9300736
TREX complex
9300736
Spliceosome [BR:
aly03041
]
Complex C
Other components
EJC/TREX
9300736
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
9300736
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
YHR127W_C
RRM_3
Motif
Other DBs
NCBI-GeneID:
9300736
NCBI-ProteinID:
XP_002864660
UniProt:
D7MT45
LinkDB
All DBs
Position
Unknown
AA seq
239 aa
AA seq
DB search
MSTGLDMSLDDMIAKNRKSRGGAGPARGTGPGPTRRNNPNRKSTRSAPYQSAKAPESTWG
HDMFSDRSEDFPPRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG
RSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGA
PWRGGQGRGGQQRGGGRGGGARGGGGRGRRPGKGPAEKISAEDLDADLDKYHSGDMETN
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactggattagatatgtctctcgacgacatgatcgccaagaaccgtaagtctcgt
ggtggagccggccccgcccgtggaaccggaccgggtccaactcgccgcaacaaccctaat
cggaaatcaacccgatctgctccataccaatcagccaaggcgccggagtctacctggggt
cacgacatgttttccgatagatctgaagatttccctccccgttcttccgccggaatcgaa
actggaaccaagctctacatatccaatttggattacggtgtcatgaacgaagacatcaag
gaactgtttgctgaagtcggagaacttaaacgctacaccgttcatttcgataggagtgga
agatcaaagggaactgctgaagtagtatactctcggcgtggcgatgcactcgcagctgtg
aagaagtacaatgatgttcagctggatggaaaacccatgaagatagagattgtgggcacc
aatcttcaaacggctgctgccccgtctggtagacctgcaaatggaaactctaatggtgct
ccatggagaggaggacaagggagaggtggtcaacaacgaggcggtggtcgaggaggtggt
gcccgtggtggtggtggtcgtggcaggcgtcctggtaagggtcctgcagagaaaatatct
gctgaagatcttgatgcggatcttgataagtaccattctggagatatggagacaaactaa
DBGET
integrated database retrieval system
