Arabidopsis lyrata (lyrate rockcress): 9300791
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Entry
9300791 CDS
T01578
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D
KO
K07466
replication factor A1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030
DNA replication
aly03420
Nucleotide excision repair
aly03430
Mismatch repair
aly03440
Homologous recombination
aly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
9300791
03420 Nucleotide excision repair
9300791
03430 Mismatch repair
9300791
03440 Homologous recombination
9300791
03460 Fanconi anemia pathway
9300791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aly03000
]
9300791
03032 DNA replication proteins [BR:
aly03032
]
9300791
03400 DNA repair and recombination proteins [BR:
aly03400
]
9300791
Transcription factors [BR:
aly03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
9300791
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
9300791
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
9300791
MMR (mismatch excision repair)
9300791
DSBR (double strand breaks repair)
HR (homologous recombination)
9300791
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
zf-RRPl_C4
DUF5651
Motif
Other DBs
NCBI-GeneID:
9300791
NCBI-ProteinID:
XP_020882839
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MQTSVTPDAISTVLSNPSFDSSSERPEIVVQVVDLKPIGNRYTFSANDGKTRVKAMFTPT
LTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVNKCEAVGSVLDSDINLESKSHAEA
SDPKKQKLEHSPVSPVNDVKTDVCTGITLKPKQEFVAKSASQIMSEQRGNAAPAARMAMT
RRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFND
AARKFYDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETK
FNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESKKTVVV
SLWNDLATGIGQELLDMADKSPVVAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLK
SWFDSEGKEISMSSIGSGMSPSSKNGSRSMYTDRVLLSHITSNPSLGEEKPVFFSTRAYI
SFIKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQKKYEECSLRYIMAVKVTDSSGETWI
SSFNDEAEKILGCSADDLNKLRSEGGEVNEYQTKLKEATWSSHVFRVSVSQNEYNGEKRQ
RVTVKGVAPLDFAAETRLLLQDISNKNKASQ
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcagacttcggtgaccccagatgctatctccaccgtattgtcaaacccatcctttgat
tcctcctccgaacgacctgagatcgttgttcaagttgtggatcttaaacctatcggcaat
cgatatacatttagtgcaaatgacggaaagacgagagtcaaagcaatgtttacacctaca
ctcacacctgaaattatttctggaaagatccagaatctgggtctaattcgtctcattgat
ttcacagttaacgacatatcaagcaaatcaacaaaatatttccttgtgaataagtgtgag
gctgttggttctgtgcttgattctgatatcaacttggagagtaagagccatgcggaggct
agtgatcccaagaagcagaaactagagcattctcctgtcagtcctgtgaatgatgttaaa
acggatgtttgtactggtatcacattgaaacccaagcaggaatttgtagccaaatcagcc
tctcagataatgagtgaacagaggggaaatgctgcaccagctgcaagaatggccatgact
agaagggttcatccacttgtgtcattaaatccttatcaaggaaactggaccatcaaagtc
cgagtcactaacaagggagtcatgagaaattacaaaaacgctagaggggaaggatgtgtc
ttcaatgtggaacttactgacgaagaaggaacacaaattcaagcaacgatgtttaatgat
gctgcaaggaagttttatgacagattccaattgggaaaggtctattatatatcaaggggg
tcacttaaacttgctaacaagcagttcaagacagttcagaatgactatgagatgacactg
aatgaaaattcagaggttgaggaagctagtagtgaagaaatgttcatccctgagacaaaa
ttcaactttgtacccattgaagagttgggtttgtatgtaaatcagaaggagcttattgat
cttatcggagttgttcaaagtgtatctcctactatgagtattagaaggagaactgacaat
gagatgattcctaagagggatataactttggctgatgagtcgaagaaaactgtcgtggtg
tccctgtggaacgaccttgcaactggcataggtcaagaactgctagacatggctgataag
tcacctgtggtcgcaatcaagtctctcaaagttggagattttcaaggtgtttcattgtcc
accatcagcagaagcaatgtggttataaacccggaatcaccagaagctaaaaagttgaaa
tcttggtttgattctgaaggcaaggagatatccatgtcttccattggctcagggatgagc
ccctcttccaagaatggatctcggtctatgtatactgatcgagtccttctctctcacatc
acaagcaacccatctttaggcgaagaaaagcctgtatttttcagcacgagggcttacata
agcttcatcaaaccagatcagacaatgtggtaccaagcttgtaagacttgtaacaagaaa
gtgaccgaagcacttgactctggttactggtgtgaaggatgccagaaaaaatatgaagaa
tgcagcctaaggtacataatggcggtgaaagtcaccgactcatctggagaaacttggatt
tcctcattcaacgatgaagcagagaagattcttggatgttcagccgatgatctcaacaaa
ctaagatcagagggaggtgaagtaaatgaatatcagacaaaactgaaagaagcaacctgg
tcatctcatgtcttccgggttagtgtctctcagaatgagtataacggtgagaagaggcaa
agggtaactgtgaaaggagtagctcctcttgattttgctgctgaaacaagattgttgctc
caagacatctccaacaagaacaaagcatctcagtag
DBGET
integrated database retrieval system
