Arabidopsis lyrata (lyrate rockcress): 9300951
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Entry
9300951 CDS
T01578
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03440
Homologous recombination
aly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
9300951
03460 Fanconi anemia pathway
9300951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aly03032
]
9300951
03400 DNA repair and recombination proteins [BR:
aly03400
]
9300951
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
9300951
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Topoisomerases
9300951
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
9300951
FA (Fanconi anemia) pathway
9300951
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Antimicrobial18
Motif
Other DBs
NCBI-GeneID:
9300951
NCBI-ProteinID:
XP_002864876
UniProt:
D7MQJ2
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MSRRGGGPVTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRML
MTSVIGHLMELEFANRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVL
WLDCDREGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVD
ARQEIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQA
HEPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERF
KYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLCAMV
EEQRRHPAWGSYAQRLLEPEGGLWRNPGNGGHDDKAHPPIHPTKFSSGESNWSRDHLNVY
ELVVRHYLACVSQPAKAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVY
EKGQQFIPTTLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKD
ANTRFSPTNLGEALVMGYDDMGYELWKPNLRALMERDMNEVSVGRKTKAEVLETCLQQMK
ACFLDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVIRRCNLCNESDMALRKNRDGNF
MVGCMNYPQCRNAVWLPGPTLEASVTTDVCQTCGPGPVYKILFKFRQIGIPPGFDVNHLG
CIGGCDDILKQLIDICGTGSRSQARRAPGTVPSNNIQGSNTRQGNFCIHCQQRGHASANC
PSRATAFRNSRLTATNPRNDESTVSCNTCGTQCVLRTANTEANRGRQFFSCPTQGCSFFA
WEDSINNSSGNATTGSNSGGSGRRGRGRGGRGGQSGGGRRNSGTSFVSATGEPVSGIRCF
SCGDPSHFANVCPNRNNSNGNYY
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacgagggggtggccccgtgacggtgctgaacgtggcggagaagccgtccgtg
gcgaagtcagtggcggggattctatcccgtggaactttccggactcgggagggtaggtct
cggtacaacaaaattttcgagttcgattacgccatcaatggccagccatgtcgtatgcta
atgacctccgtcattggccacctgatggagcttgaattcgccaatcgttaccgcaaatgg
cactcctgtgacccggcagatctgtaccaagctccggtcatgaaacacgttcccgaggac
aaaaaggatattaagaagacattggaggaggaagcaaggaaaagcgactggcttgtgctg
tggcttgattgtgatagggaaggtgaaaacattgcatttgaagttgtagatgtttgcaga
gctgtcaaacataatctttttatacgcagggctcatttctctgcgttaattgacagagat
attcatgaagcagttcagaatcttagagatcctaatcaattgtttgctgaggctgtagat
gctagacaagaaatagacctacgcattggtgcttctttcactagatttcagactatgctg
ctgagagataggtttgctattgactccacgggtgaggagaggagtcgtgttataagttat
ggtccttgtcagtttcctactcttggctttattgtagagcgatactgggagatccaggca
catgaaccagaagagttttggacaatcaactgttctcaccaatcagaagaaggccttgcc
acctttaattggatgcgtggtcatctcttcgattacgcttcagctgtcatattatatgag
atgtgcgttgaggaacctactgccactgtaatgaatgtcccacatccaagggaacgattc
aaatatcctccttatcctttgaacaccattgaacttgaaaaacgtgcttcaagatacttc
cgcctgagttcagagcacaccatgaaggtggcagaagaattataccaggctggtttcatc
agctatcctcgtacagagactgattctttttctagcaggacagatttatgtgctatggtg
gaggaacaaagaagacatcctgcctggggttcatatgcacaaagactattagagcctgag
ggcggcctctggagaaaccctggtaatggtggtcatgatgacaaggctcacccacccatt
cacccgacaaagttttctagcggagagtctaactggagtagagatcaccttaatgtatat
gagctagttgtccgccattacctagcatgtgtttcccagccagcaaaagctgctgaaact
acagtcgaaattgatattgctggtgaacgcttttctgcatctgggagagcaatattagct
aaaaattaccttgaggtgtaccgctttgaatcatgggggggttcagtgattcccgtgtat
gaaaaagggcagcagtttatcccaacaactttgactcttgattcagctgtaacgaggcca
ccaccgctattgtgtgaagctgacttactgagttgtatggacaaggcaggcattggcacc
gatgctacaatgcacgaccacataaagaaactccttgatcggggttatgcaacaaaggat
gctaatacgcggttttctccaaccaacctgggtgaggcgcttgtgatgggatatgatgac
atggggtatgaactttggaaaccaaatctcagagcccttatggaacgtgatatgaatgaa
gttagtgttggcaggaagaccaaagctgaggttcttgaaacatgtttgcagcaaatgaaa
gcttgtttcttagatgcaagagtaaaaaaatcaaagctcctagaagcaatgacaattttc
tttgaaagatctaataacactgatgaaagtgaaagtcagacagctggtgaagttatccga
cgatgcaacctctgcaatgaatcagatatggcactcaggaagaacagggatggcaatttc
atggttgggtgcatgaattatcctcagtgtcgaaatgcggtctggcttcctggaccaaca
ttggaagcatctgtcactactgatgtttgtcaaacctgtggtccaggcccagtctacaag
atacttttcaagttccgtcaaattggaattccaccaggctttgatgttaatcacttaggt
tgcatcggtggctgtgatgacattcttaaacagttgatagacatatgtggaactggatcc
cgttctcaagcaaggagagctccaggtactgtaccgtcaaacaatatccaaggaagcaac
acacgacagggtaatttctgcatacattgccagcaacgaggacatgcgtctgctaattgt
ccctcacgggctacagcatttcgaaattctcgtcttactgcaacaaatccgagaaacgat
gaaagtacagtttcatgtaacacttgtggaacacaatgtgttcttcgtacagccaacaca
gaagctaacaggggaagacaattcttctcatgtccaacacaaggctgcagtttctttgca
tgggaagatagcattaacaacagtagtgggaatgcaacaactgggtctaatagcggcgga
agcggtagacgtggtcgtggccgtggaggtagaggcggccaaagcggtggaggacgacgc
aactctggaacaagctttgtctctgcaactggagagccagtgagtggtataaggtgcttc
tcatgtggtgatccttcacattttgctaacgtttgtcctaatcgtaataactctaacggt
aactattactaa
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