Arabidopsis lyrata (lyrate rockcress): 9301091
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Entry
9301091 CDS
T01578
Name
(RefSeq) small RNA degrading nuclease 3 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
9301091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aly03009
]
9301091
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
RNases
9301091
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
RRM_fung
RRM_1
HMG_CoA_synt_C
DUF4195
Motif
Other DBs
NCBI-GeneID:
9301091
NCBI-ProteinID:
XP_002865016
UniProt:
D7MKR8
LinkDB
All DBs
Position
Unknown
AA seq
776 aa
AA seq
DB search
MEHKLATAEKKVLVDLVKLVQKRGLEGENGGWKEFLNVYDKKFGSSLSDPSRRSNDVLVA
FLLTFKKKEDLQLIARVMQCGANRELIEKFKQETPDKETPEQRLVRLTITHFQYPTNYLF
PSYAEDWFVTELGKKKSKVMKSTRMLAIDCEMVTCDDGTEAVVRVGAVDRDLKVVLDKFV
KPDKTVFNYKTDITGVTAEDLERATLSVTDIQKKLRRFLSQGTILVGHGLHNDLKVLRID
HARVIDTSFVFEFENAPKTHRPSLNNLCKAVLGQELRMPDAAHNCVHDAAASMKLVLAVV
EKGVDTTIQKSEEMLVAEKKRQEERQEAGKTQLFLHKIPHYVPSEELQGVLNGDFTLVVK
PPQKEGGYSTAVLDFNSPEEANEAFENVEGDVAKDKSGLPQKMVTLKLSSGLVASLYVRK
MVKDESLSEISTTKRARTEENNVSSKRQKTEDDSEEPKEANVNQKEADKTKLFLHKIPHD
VPSQELHGVLNGDFTLEVKPPKRKGGYYNAVVGFNSPEEANKAFENVVGDVVKDKAGLPQ
KMVALKLSSGSGASLYVRKMVQDESPGEISTTEENNVSSKRQKTEDESEETKEANVNQRE
ADKRKLFLHKIPLNVPSQELKGVITGKFTLEVMRPKRKGGYYNAFVVFNSPEEANKAFDK
VKGEAAKEKGGLAQKMVAFKLSSGSGASLYVRKMVQDESEEAEEANANHCEDHLKEIEEL
KEKLKAKDFANSCEGHSKEIEELNHKLKAKEHQIQAQDKIIDNLKMKLEKKQSKSR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggagcataaactagctactgctgagaaaaaagtgctagtagacttggtgaagctagtt
cagaaacgtggtttagaaggcgaaaacggaggttggaaggagtttctaaatgtttacgac
aaaaaattcggatcgagtttgagtgatccttcgagacgttccaatgatgttttggttgct
tttcttttgaccttcaaaaagaaagaagatttgcagctaatagctagggttatgcaatgc
ggtgctaatcgtgaactaattgagaaattcaagcaagaaactccggataaagagactcct
gagcagaggctagttcgattgactattacgcatttccagtaccctacaaactatttgttt
ccttcctacgctgaggattggtttgtaactgaacttggaaagaagaagtccaaagtgatg
aaatcaactagaatgcttgctattgattgtgagatggttacctgtgatgatgggaccgag
gctgtagttagagttggcgctgtggaccgcgacttaaaggtggttcttgacaagtttgtg
aaaccggacaaaacggtttttaactataagactgacattactggagttactgctgaggat
cttgagagagctactctatctgtaacagatattcagaaaaaattgcggaggtttctttct
cagggaactattttggtaggtcacggtttgcataatgatcttaaagtgttgaggatagat
catgcgagagtaatagatacttcatttgtatttgagtttgagaatgcaccaaagactcat
agaccttctttgaataatctatgcaaggctgttttgggtcaagaactgagaatgcccgat
gctgctcacaattgtgttcatgacgcagcagcttccatgaaacttgtacttgctgttgta
gaaaaaggagtagacactacaatccaaaaatctgaagaaatgttggtggctgagaagaaa
agacaggaggaaagacaggaagctggtaagacacagctcttccttcataaaatccctcac
tatgttccgtctgaagagttacaaggagttcttaacggggacttcacactcgtagttaag
ccaccacaaaaagaaggaggttattctactgcagtccttgattttaatagtccggaagaa
gcaaatgaagcatttgaaaatgttgaaggagacgtagctaaggataaatcaggtttgcca
caaaaaatggttacactgaagctgagttctggattagtagctagtttatatgttcgtaaa
atggttaaagatgagtctctgagtgaaatctctacaaccaagagagctcgaacagaggag
aacaatgtgagttctaagagacagaagacagaagatgattctgaggaacccaaagaagca
aatgtaaaccaaaaagaggctgataagacaaagctcttccttcataagatccctcacgat
gttccatctcaagagttacatggagttcttaacggggatttcacactcgaagttaagcca
ccaaaaagaaaaggaggttattacaatgcagtagttggttttaatagtccagaagaagca
aataaagcatttgaaaatgttgtaggagacgtagttaaggataaagcgggtttaccacaa
aaaatggttgcgttgaagctgagttctggctcaggagctagtttatacgttcgtaaaatg
gttcaagatgaatctccgggtgaaatctctacaacagaggagaacaatgtgagttctaag
agacagaagacagaagatgaatctgaggagaccaaagaagcaaatgtaaaccaaagagag
gctgataagagaaagctcttccttcataaaatccctctcaatgtcccatctcaagagtta
aaaggagttattaccggcaagttcacactggaagttatgcgaccaaaaagaaaaggaggt
tattacaatgcatttgttgtttttaatagtccagaagaagcaaataaagcatttgacaaa
gttaaaggtgaagcagctaaggagaaagggggtttggcacaaaaaatggttgcgtttaag
ctgagttcaggatcaggagccagtttatacgtccgtaaaatggttcaagatgaatccgag
gaggctgaagaggcaaatgcaaaccattgtgaggatcatttaaaggaaattgaagaactg
aaggaaaaactcaaagctaaggactttgcaaacagctgcgaaggtcattcaaaagaaatt
gaagaactgaatcacaaactcaaagctaaggaacatcagatccaggcgcaggataagatt
atagacaacctcaaaatgaaactggagaagaaacagtcaaagtctcggtaa
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