Arabidopsis lyrata (lyrate rockcress): 9301225
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Entry
9301225 CDS
T01578
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9301225
03015 mRNA surveillance pathway
9301225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9301225
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
9301225
5.6.2.5 RNA 5'-3' helicase
9301225
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
9301225
mRNA cycle factors
Common to processing body (P body) and stress granule
9301225
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
DEAD
nSTAND3
NPHP3_N
Helicase_RecD
PhoH
ATPase
Viral_helicase1
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
9301225
NCBI-ProteinID:
XP_020884496
LinkDB
All DBs
Position
Unknown
AA seq
1253 aa
AA seq
DB search
MDSQQSDLFDTASQPDAVADAYTFLEFNTQGDSEFDYPEFRSPTAWPTPSDSISIADVSD
RGGGGAAADHHSEASSPSSLSAGAGNGAKVGRGGVGGSGGVSSSSQVDALAAGMGNLNFE
ETGDDDGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLV
RAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKD
MNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLE
KPGVDDEPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKR
VAYFVFPKEENELRLVPGDELRLRYSGDTAHPAWQSVGHVIKLTAQEEVALELRANQGVP
VDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRR
FGVPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP
SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL
KDEQGELSSSDEKKYKNLKRQTEREITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQ
ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQV
QYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEISAS
GTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKE
IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS
KQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFSCGGAGMIGNDNYG
SGNPNADRRGSRGRAGGPYLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPT
RGPVGAVPHAPQPGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPSLNFPLDSPNSQPSP
GGPLSQPGYGSQAFRDGFSMGGISQDFLGDDFKSQGSHVPYNMADFSTQASQGGYAVDYA
TQGAHGAFPGNFMNQNSQGGYSRFSGNNDFMSQEYMAHGGQGLFTQAGFIDSSQDDGQNP
YGVNNPNLQSQGLPNSLYSQPFSHYNTQPLNLSGPQQSQPNQSSQNPKHPYNG
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaacagagcgatctctttgacaccgcatcgcagccggacgcggtggctgac
gcgtatacctttttggaattcaatactcaaggcgattcagagttcgattacccggagttt
cgatcaccgacggcatggccgacaccttctgattccatttccatcgctgacgtttccgat
cgtggtggaggaggagctgccgcggatcatcactccgaggcttcgtcaccttcttctctc
tctgccggtgccggaaacggtgccaaagtgggacgtggtggagttggtggaagtggtggt
gttagtagtagtagtcaggttgatgcattggccgctggtatgggaaatttgaactttgag
gagactggtgatgatgatggttttgattatggtaagaatgatttcacggagcatgcttgt
aagtattgtggtatctcgaacccagcttgcgttgttaggtgtaatgtcgcttcttgtaga
aagtggttctgcaattcaaggggaaacacctcaggctctcatattgtgaatcacctggtt
cgagcaaaacacaaggaagtttgtctccatagagacagtccactaggggaaacaattctc
gaatgctacaactgtgggtgtcgaaatgtctttcttctcggtttcatctcagcaaagaca
gacagtgttgtcgtccttctctgtagagatccttgtttaaatgtaaatgccctgaaggat
atgaactgggacctaagtcagtggtgtcccttgattgacgatagatgtttcctcccctgg
cttgttaaggtcccatcagagcaagaacagctgagggcacgccaaattagcgcacagcaa
ataaacaagatagaggaattatggaagacaaatccggatgctactcttgaagaccttgaa
aaacctggtgtagatgatgaacctcagcctgttcaacctaagtatgaagatgcatatcag
tatcaaaatgtgtttgcacctctaatcaaactcgaagcagactatgacaagatgatgaaa
gagtctcaaagcaaggaaaatctcacagttcggtgggatattggtcttaacaagaagcgc
gttgcatacttcgtcttcccaaaggaggaaaatgaattgcgattggtgccgggtgatgaa
ctacgtctgcgttactcgggagatactgctcatccagcctggcagtcagttggacatgtg
atcaagctaacggcacaggaagaggttgctcttgaactccgagctaaccagggagttccg
gttgacgttaaccatggattcagtgttgattttgtttggaaaagtacaagctttgatcga
atgcagggagcaatgaagaattttgctgtagatgaaacaagtgtgagtggttatatctac
catcagttattgggacatgaagttgaggcccagatggttcgtaacacactacctcgacgt
tttggggtacctggtcttccagaactgaatgcatctcaggttaatgcggtgaaaagtgtc
cttcagaagcccatcagcttgatccaaggtcctcctggcacaggcaaaactgtgacttct
gcagcaattgtgtaccacatggcaaaacagggccagggacaggttctcgtttgtgcccca
agtaatgttgctgtagaccaactagctgaaaaaattagtgcgactgggttaaaggttgtt
cgcctttgcgcaaaatcaagggaagctgtaagttctcctgtagagcatttgactcttcac
taccaggtaagacatcttgacacatctgagaagagcgaactgcataagctgcagcagttg
aaagatgaacaaggtgagctgtcaagcagtgatgaaaagaaatacaaaaatttgaaaaga
cagacagaacgcgagataacccagagtgctgatgtcatatgctgcacatgtgttggtgct
gccgatcttcggttgtcaaactttagatttagacaggtacttattgatgagtctactcaa
gcaacagaacctgagtgccttatccctttggtccttggagtaaaacaggttgttcttgtt
ggtgatcattgtcagcttggccccgtcattatgtgcaagaaagcagctcgtgctggcttg
gcacagtctctctttgaacgccttgtgcttcttggtattaaaccaatcagattgcaggtt
caatatcgtatgcatccagctttgtccgagtttccatccaacagcttctatgaaggaaca
ctacagaatggagtcacaattattgaaaggcaaacaacagggattgatttcccatggcct
gttcctaaccggcccatgtttttctatgttcagctgggacaagaggagatcagtgctagt
ggaacatcatatcttaatagaactgaggctgctaatgtggagaaacttgtgactgctttc
ttaaagagtggagttgtccctagtcagattggagttataactccatatgagggtcagagg
gcttacattgttaattacatggcaagaaatggttctctccgacagcaactttacaaggaa
attgaggttgccagtgttgattcttttcaaggaagggaaaaagattacatcatattgtcc
tgtgtgagaagtaatgagcatcagggcattggattccttaatgatccacggaggctcaat
gttgcacttacgcgtgctcgttatggaattgttattcttggaaacccaaaagttcttagt
aaacagcctctgtggaatggattgttgacacattacaaggaacatgagtgcttggtcgag
ggacctcttaataatctaaagcagagtatggtacagtttcagaaaccaagaaagatttac
aatgatcggagactattttcttgtggtggcgctggcatgattggaaatgataattatggt
tcgggtaaccctaatgctgacagaagaggcagtcgaggaagggctggtggtccctatctt
ccttctggcccacctaatggtgctagacctggactacacccagcgggctacccgatacct
agggttccactttcaccctttcctggtggtcctccttctcagccatacgctattccaact
cgtggacctgttggtgctgttcctcatgctccccaacctggaaaccatggttttggagct
ggtcgtggaacttccgttgggggccaccttccacaccaacaagccacccaacataatgtt
ggaactattggaccaagtttaaactttccccttgatagtccgaatagccagccttcacct
ggtggtccgctatcccaacctggatatggtagccaagcgttcagggatggattttctatg
ggtggcatatctcaggatttcttgggtgatgatttcaagagccagggatctcatgttcct
tacaacatggccgatttttctacacaggcctcacagggtggatatgctgttgattatgcc
acacaaggagcacatggggcgtttcctggaaactttatgaatcagaattctcaaggcggt
tattctcgtttcagcggaaataatgatttcatgtctcaggagtatatggcacatggaggt
caaggtcttttcacccaagccggctttatcgactcatcccaggatgatggacagaatcct
tatggtgtgaacaatcctaatcttcagtctcagggtctcccgaattcgctctactctcag
ccattctcacactacaacacgcagccactaaacctttcaggaccacagcaatctcaacct
aaccagagctcacaaaacccaaaacatccttacaatggctga
DBGET
integrated database retrieval system
