Arabidopsis lyrata (lyrate rockcress): 9301396
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Entry
9301396 CDS
T01578
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9301396
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9301396
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
InlK_D2
Motif
Other DBs
NCBI-GeneID:
9301396
NCBI-ProteinID:
XP_020871320
LinkDB
All DBs
Position
Unknown
AA seq
342 aa
AA seq
DB search
MCGSGGNSKTFLIPSNKTFLLQPLMFQGPCKSPSVQVKFDGKIVAPINKAAWSENKLFRW
VSFKEIIGLTVTGSGTIHGRGSSFWKPRMSPSKRPTQLHFKSCNDLKISGITSFNSPRNH
ISISECKRVKITKIKLVAPHDSPNTDGIDISRSSDVDIYDTIIGTGDDCVAINNGSMNIN
ITRMNCGPGHGISVGSLGRDGEESIVENVQVTNCTFFRTDNGARIKTWPNGKGYAKNILF
QGLTFRETKNPIIIDQNYVDKGRLDVEESAVAISNVTFTDIRGTSQVDEIIKIDCSKVTY
CKDIVLDKIDIATVDGNKPVVECSNVYGKSINANEANGCFKT
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggtagtggtgggaattcaaaaacattccttattccttcaaacaaaacattctta
ctacaacctcttatgttccaaggcccttgtaaatctccttccgtacaagttaagtttgac
ggaaagattgttgcgcctatcaacaaagcagcttggtcggaaaataagctatttagatgg
gttagttttaaggaaataatcggtttaacagtcactggttcgggaacaattcatggacgt
ggttcgtctttttggaagccaagaatgtcaccttctaaacggcctactcaattgcatttt
aaaagttgcaatgatctcaagataagtggaataacctcattcaacagtccaagaaaccat
atatcgattagcgaatgcaaaagagttaaaattacgaagataaaactcgtagcaccccac
gatagtcctaacactgatggaattgatatctcacgatcaagtgatgtcgatatatacgac
acaattattggaactggcgatgattgtgtagctataaacaacggaagtatgaatatcaat
atcacaaggatgaattgtggacctggccatggaataagtgtgggaagtctaggaagagat
ggagaagaatctatagttgagaatgtccaagtgactaattgcactttctttaggacggat
aatggagctaggattaagacatggccgaatggaaagggatacgcaaaaaatatacttttt
caaggccttacgttcagagaaaccaaaaatccaattataatcgaccaaaactatgtcgat
aagggtcgcctagacgtggaggaatcagcagtggcaattagtaacgtgacattcaccgat
attcgtggaacgtcacaagtcgatgagattataaagatagattgcagcaaagtcacatat
tgcaaagacattgttcttgataaaatcgatattgctacggtcgatggaaataagccagtt
gttgaatgcagtaacgtgtatggaaagtctatcaatgctaacgaggccaatggttgtttc
aaaacatag
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